Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.2e-218 761.9 370 100.0
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-204 716.1 370 92.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 2.4e-204 715.3 370 92.4
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.0e-204 713.8 370 92.2
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 4.4e-182 641.3 370 84.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.9e-181 637.9 368 80.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-180 636.3 368 80.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 9.2e-180 633.6 368 81.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 5.1e-178 627.9 372 77.4
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.1e-177 626.7 368 77.4
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 3.3e-177 625.2 368 77.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 8.1e-176 620.5 373 77.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.6e-174 615.5 370 76.2
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 4.9e-173 611.3 370 75.9
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 6.4e-173 610.9 370 75.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.4e-172 609.8 374 75.7
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 4.2e-172 608.2 366 76.0
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 7.1e-172 607.4 368 75.3
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 9.2e-172 607.1 372 75.0
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.6e-171 606.3 370 76.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.7e-171 605.5 370 75.9
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 6.0e-171 604.4 368 75.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.3e-170 603.2 374 75.4
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.3e-170 602.4 368 73.9
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 3.9e-170 601.7 370 74.1
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.6e-170 600.9 376 74.2
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 8.7e-170 600.5 370 73.8
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.5e-169 599.7 370 73.8
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.9e-169 599.4 420 71.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.3e-169 598.6 370 74.3
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 5.6e-169 597.8 368 75.8
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.3e-168 596.7 370 74.3
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.3e-168 596.7 368 75.8
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.6e-168 596.3 368 74.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.8e-168 595.5 368 73.6
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.6e-168 595.1 368 73.9
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 6.2e-168 594.3 370 74.1
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.4e-167 593.2 372 72.8
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.8e-167 592.8 369 71.8
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.8e-167 592.8 370 75.1
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.8e-167 592.8 368 73.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.4e-167 592.4 368 73.6
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.4e-167 592.4 370 73.2
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.0e-167 591.7 368 74.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 4.0e-167 591.7 374 72.5
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.9e-167 590.9 366 73.8
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 9.0e-167 590.5 370 73.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.5e-166 589.7 368 73.6
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.6e-166 589.0 370 72.4
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 2.6e-166 589.0 370 72.2
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.6e-166 589.0 372 73.1
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.4e-166 588.6 368 74.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 4.4e-166 588.2 373 72.4
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 9.9e-166 587.0 370 72.7
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 9.9e-166 587.0 371 72.0
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.3e-165 586.6 373 71.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.7e-165 586.3 370 72.7
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.2e-165 585.9 370 72.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.2e-165 585.9 370 71.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.9e-165 585.5 368 71.5
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.9e-165 585.5 370 72.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.4e-164 582.4 371 72.0
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.2e-164 582.0 370 72.4
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 4.2e-164 581.6 368 72.8
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.2e-163 580.1 370 74.3
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.2e-163 580.1 370 74.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-162 576.2 375 72.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.3e-162 575.9 372 71.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.3e-162 575.9 368 73.1
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.0e-162 575.5 370 73.5
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 3.0e-162 575.5 370 73.5
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 3.0e-162 575.5 370 73.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 3.0e-162 575.5 370 71.1
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-162 575.5 375 72.5
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 3.9e-162 575.1 370 73.5
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 3.9e-162 575.1 370 73.5
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 3.9e-162 575.1 370 73.5
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.9e-162 575.1 370 73.2
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 8.7e-162 573.9 370 73.5
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.5e-161 573.2 370 73.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.9e-161 572.8 372 70.2
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.3e-161 572.0 356 75.6
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.6e-161 571.2 372 71.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 9.6e-161 570.5 370 73.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 9.6e-161 570.5 370 73.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-160 570.1 370 72.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-160 570.1 370 72.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.3e-160 570.1 370 72.7
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.3e-160 570.1 370 73.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.6e-160 569.7 370 73.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 6.2e-160 567.8 370 71.1
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.4e-159 565.8 370 71.1
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.1e-159 565.5 366 71.9
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 9.9e-158 560.5 366 71.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.8e-157 558.5 368 69.0
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.8e-157 558.5 347 75.5
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 4.9e-157 558.1 480 59.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.6e-155 553.1 335 81.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.9e-155 550.8 372 69.1
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.9e-155 550.8 372 68.5
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.8e-154 549.7 335 81.2
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-154 549.3 372 68.8
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.1e-151 540.4 368 68.8
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.0e-151 538.5 374 67.6
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 9.0e-151 537.3 368 71.2
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-150 536.6 383 66.1
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-150 536.6 372 68.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.4e-150 535.4 368 67.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 5.8e-150 534.6 338 72.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.5e-148 529.3 433 60.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 4.2e-148 528.5 339 74.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.7e-147 525.8 374 66.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.9e-145 519.6 396 67.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 4.0e-143 511.9 372 68.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.0e-141 507.3 368 66.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.0e-141 507.3 374 61.8
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 6.1e-139 498.0 299 76.9
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 7.9e-139 497.7 445 57.5
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.9e-137 493.0 465 57.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.6e-136 490.0 376 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.2e-136 489.6 368 61.4
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.4e-135 486.9 337 67.4
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.2e-134 483.8 368 62.5
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 5.9e-134 481.5 369 65.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.0e-133 480.7 366 65.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.7e-133 479.9 300 75.3
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.9e-133 479.2 374 58.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.9e-132 476.5 296 73.6
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.2e-128 463.0 384 62.5
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.7e-128 462.2 341 66.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.8e-127 459.9 357 64.4
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 7.7e-126 454.5 358 66.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.5e-125 451.4 366 60.9
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.8e-122 443.4 303 69.3
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.4e-119 433.7 303 69.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 9.1e-119 431.0 347 60.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.6e-115 420.2 368 58.7
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 8.0e-115 417.9 263 76.0
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.4e-111 407.1 263 72.2
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.4e-111 407.1 259 73.4
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.1e-111 406.0 331 61.9
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.0e-109 398.7 256 74.6
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.5e-108 397.1 334 60.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.4e-106 390.6 252 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.2e-98 362.1 300 58.0
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-96 356.7 210 77.1
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.5e-92 343.2 239 66.9
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.8e-90 335.1 225 71.1
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.0e-89 333.6 228 70.6
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 4.6e-86 322.4 388 44.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.9e-71 273.9 146 78.1
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.6e-65 253.4 192 62.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.5e-62 243.0 166 62.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.1e-60 238.0 155 72.9
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.0e-58 229.6 172 61.6
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.2e-55 219.5 157 72.0
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 4.6e-54 216.1 366 34.2
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.8e-48 196.4 104 81.7
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.4e-48 195.3 145 65.5
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.7e-45 187.6 317 36.0
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.1e-44 184.9 133 71.4
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.3e-40 171.4 116 70.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 6.1e-22 109.4 81 67.9
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.3e-21 107.5 197 33.5
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 8.7e-21 105.5 230 30.9
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 5.7e-20 102.8 49 91.8
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.6e-14 84.7 49 67.3
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 4.6e-14 83.2 50 66.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.1e-10 72.0 106 39.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.1e-10 70.1 39 79.5
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 4.1e-10 70.1 63 46.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 3.8e-08 63.5 42 69.0
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 2.5e-07 60.8 40 70.0
Peaxi162Scf00126g01016 Petunia axillaris HOM05D004042 ORTHO05D306396 3.6e-06 57.0 25 92.0


User provided reference genes

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