Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.8e-187 659.1 333 100.0
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 8.1e-167 590.5 333 88.9
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.4e-165 585.1 333 88.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.7e-162 575.5 333 86.5
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.7e-161 572.8 333 86.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-141 506.5 333 79.6
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-138 496.5 281 88.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.5e-128 463.4 330 68.5
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 5.8e-125 451.4 330 66.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.3e-124 450.3 332 66.9
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.8e-124 448.7 332 67.5
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 6.5e-124 448.0 330 67.6
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 4.2e-123 445.3 335 66.6
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.5e-122 442.2 334 66.2
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.0e-121 439.1 333 66.4
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 3.9e-121 438.7 333 65.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.9e-120 436.4 331 67.7
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.3e-120 435.3 330 64.8
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.3e-120 435.3 330 64.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 5.7e-120 434.9 331 65.3
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.2e-119 433.0 330 65.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.8e-119 431.8 331 65.9
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.1e-118 430.6 332 66.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-118 430.3 330 64.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.4e-118 429.5 331 65.0
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 6.9e-118 427.9 330 65.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 6.9e-118 427.9 330 64.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 6.9e-118 427.9 334 65.3
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.6e-117 426.0 330 63.6
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.6e-117 426.0 330 63.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.5e-117 425.2 331 66.2
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 7.7e-117 424.5 330 64.8
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.0e-116 424.1 330 63.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.9e-116 422.5 330 64.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.0e-116 421.8 329 63.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.5e-116 421.4 330 64.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.4e-115 420.2 330 64.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.4e-115 420.2 330 64.2
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.4e-115 420.2 331 64.7
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.5e-115 419.5 331 64.0
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 3.2e-115 419.1 329 63.2
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.6e-114 416.8 334 64.1
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.1e-114 416.4 335 63.6
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.7e-114 416.0 330 62.4
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.7e-114 416.0 329 62.6
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.7e-114 416.0 329 63.2
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.6e-114 415.6 331 62.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.6e-114 415.6 334 63.5
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.6e-114 415.2 329 62.3
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.8e-113 413.3 331 63.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.8e-113 413.3 330 62.4
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.3e-113 412.9 331 62.8
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.9e-113 412.1 330 62.7
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 6.7e-113 411.4 332 63.6
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.1e-112 410.6 330 62.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.5e-112 410.2 329 61.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.5e-112 409.5 330 62.1
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.3e-112 409.1 330 62.1
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 7.4e-112 407.9 330 63.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.7e-111 405.6 330 60.6
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.4e-110 402.9 330 61.5
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.1e-110 402.1 331 60.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.2e-109 400.6 330 62.1
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.2e-109 400.6 330 62.4
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.0e-109 399.8 331 60.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 5.9e-109 398.3 333 61.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.7e-109 397.9 330 60.9
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.0e-108 397.5 331 61.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 6.5e-108 394.8 327 61.5
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.9e-107 393.3 328 62.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 4.2e-107 392.1 331 59.2
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.2e-107 391.3 334 58.7
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.1e-106 389.8 331 58.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.6e-106 389.0 331 58.6
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 6.1e-106 388.3 331 59.8
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.4e-105 387.1 332 57.8
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 5.1e-105 385.2 330 58.8
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-104 384.0 329 58.1
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.7e-104 381.7 330 56.7
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.7e-103 379.0 384 52.6
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.1e-102 377.5 334 58.1
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-102 377.1 330 58.8
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.8e-102 376.7 330 57.3
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 4.1e-102 375.6 330 57.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 7.0e-102 374.8 330 59.1
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.2e-101 374.0 329 57.8
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 7.7e-101 371.3 331 59.8
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 8.5e-100 367.9 331 58.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.2e-99 365.5 334 54.5
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 5.5e-99 365.2 330 55.8
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.2e-99 364.8 331 56.2
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.6e-98 363.6 330 55.5
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.1e-98 363.2 331 57.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.0e-98 361.3 331 55.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 8.8e-97 357.8 332 57.8
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.2e-95 353.2 333 55.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.8e-95 352.1 332 52.4
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 3.5e-93 345.9 331 53.8
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-92 344.0 331 54.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.2e-92 343.2 330 53.0
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 8.0e-90 334.7 333 52.9
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 8.8e-89 331.3 337 51.3
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.2e-88 330.9 333 53.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 7.5e-88 328.2 316 54.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 5.3e-86 322.0 330 50.6
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 5.3e-86 322.0 263 60.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.0e-86 321.6 338 53.6
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.1e-86 321.2 337 48.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.2e-84 316.6 321 52.0
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-84 316.2 339 48.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.5e-84 315.1 329 51.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.5e-83 313.9 228 68.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 3.6e-82 309.3 337 49.3
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 5.7e-80 302.0 298 53.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 7.5e-80 301.6 337 45.7
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-79 300.8 231 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.7e-79 300.4 353 47.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.1e-78 297.7 346 45.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.1e-78 296.2 334 48.2
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-76 290.8 330 49.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-76 290.8 330 45.8
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.0e-76 288.9 277 51.6
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.1e-74 282.0 199 69.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 2.8e-71 273.1 350 45.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.7e-69 266.5 228 57.0
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.9e-68 262.7 336 44.3
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 9.5e-67 258.1 282 52.1
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 4.7e-66 255.8 342 47.4
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.4e-63 245.4 338 45.0
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-62 244.2 257 52.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.1e-57 228.0 482 32.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-57 228.0 331 47.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.6e-48 195.3 390 35.9
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.9e-48 194.9 194 47.9
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.7e-45 186.8 143 72.7
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.3e-36 157.9 285 35.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-36 157.1 168 44.6
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-35 153.7 199 44.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.0e-32 144.1 327 34.6
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-31 141.4 79 89.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 8.1e-26 122.1 105 59.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-20 104.8 71 66.2
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-19 99.8 103 42.7
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 7.6e-16 89.0 66 60.6
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.5e-15 85.9 62 61.3
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-12 77.4 73 54.8
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-12 77.4 73 52.1


User provided reference genes

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