Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1578.16 Capsicum annuum HOM05D002932 ORTHO05D003208 6.3e-79 297.4 148 100.0
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 8.2e-71 270.4 147 92.5
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 1.9e-67 259.2 147 89.1
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 1.2e-61 240.0 150 80.7
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 4.7e-58 228.0 152 78.9
CAN.G1578.6 Capsicum annuum HOM05D000129 ORTHO05D000997 5.2e-57 224.6 118 94.1
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 5.5e-51 204.5 153 73.2
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 3.0e-49 198.7 152 69.7
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 4.0e-49 198.4 147 72.8
CAN.G1884.5 Capsicum annuum HOM05D025866 ORTHO05D020249 5.7e-48 194.5 109 88.1
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 7.5e-48 194.1 147 71.4
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.4e-46 189.1 147 71.4
CAN.G1495.19 Capsicum annuum HOM05D000129 ORTHO05D000997 8.0e-26 120.9 63 95.2
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 2.2e-23 112.8 156 48.7
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 3.0e-20 102.4 179 42.5
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 1.6e-18 96.7 152 44.1
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 8.1e-18 94.4 154 44.2
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.1e-17 92.4 154 44.2
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 4.0e-17 92.0 156 40.4
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 9.9e-16 87.4 148 39.2
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 6.4e-15 84.7 150 41.3
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 8.3e-15 84.3 154 42.2
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.1e-14 84.0 149 43.0
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 1.9e-14 83.2 152 38.8
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 5.4e-14 81.6 155 41.9
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 7.1e-14 81.3 147 40.8
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 9.2e-14 80.9 154 35.1
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 9.2e-14 80.9 149 43.0
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.7e-13 79.3 119 42.0
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 3.5e-13 79.0 129 41.1
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.5e-13 79.0 157 37.6
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 6.0e-13 78.2 170 38.2
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 7.8e-13 77.8 154 35.7
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 7.8e-13 77.8 152 36.2
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 1.0e-12 77.4 152 35.5
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.3e-12 77.0 145 39.3
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-12 76.6 148 37.2
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.7e-12 76.6 157 36.9
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.3e-12 76.3 145 39.3
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.3e-12 76.3 145 39.3
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 3.0e-12 75.9 165 37.6
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 3.0e-12 75.9 154 33.8
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 3.0e-12 75.9 123 42.3
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.9e-12 75.5 151 35.8
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 3.9e-12 75.5 151 35.8
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 3.9e-12 75.5 156 35.3
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 6.6e-12 74.7 157 36.3
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 6.6e-12 74.7 159 36.5
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 6.6e-12 74.7 141 39.0
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 6.6e-12 74.7 154 36.4
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 8.6e-12 74.3 157 35.0
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.1e-11 73.9 124 40.3
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 1.1e-11 73.9 156 35.9
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 1.5e-11 73.6 153 35.3
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.5e-11 73.6 157 36.3
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 2.5e-11 72.8 157 35.7
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.3e-11 72.4 153 38.6
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 7.3e-11 71.2 150 33.3
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 7.3e-11 71.2 141 38.3
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 7.3e-11 71.2 151 37.7
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 9.5e-11 70.9 131 38.9
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 9.5e-11 70.9 155 37.4
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 1.2e-10 70.5 149 36.2
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 1.2e-10 70.5 149 36.2
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.2e-10 70.5 147 36.1
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 1.2e-10 70.5 152 32.9
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.2e-10 70.5 157 39.5
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.6e-10 70.1 98 45.9
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 1.6e-10 70.1 117 45.3
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 1.6e-10 70.1 157 35.0
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 2.1e-10 69.7 156 35.3
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.1e-10 69.7 153 38.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 2.1e-10 69.7 155 36.1
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 3.6e-10 68.9 153 35.3
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 3.6e-10 68.9 156 34.6
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 4.7e-10 68.6 118 45.8
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 4.7e-10 68.6 129 39.5
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 6.2e-10 68.2 136 38.2
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 6.2e-10 68.2 154 35.7
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.1e-09 67.4 137 35.8
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 1.1e-09 67.4 153 32.7
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.1e-09 67.4 122 38.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.1e-09 67.4 125 41.6
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.4e-09 67.0 156 32.1
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.4e-09 67.0 150 34.7
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 2.4e-09 66.2 157 31.2
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.4e-09 66.2 122 36.1
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 3.1e-09 65.9 156 36.5
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 4.0e-09 65.5 123 37.4
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 4.0e-09 65.5 138 36.2
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.0e-09 65.5 138 36.2
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.0e-09 65.5 138 36.2
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.0e-09 65.5 138 36.2
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 4.0e-09 65.5 156 32.1
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 4.0e-09 65.5 150 38.0
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 4.0e-09 65.5 114 37.7
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 5.2e-09 65.1 155 35.5
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 5.2e-09 65.1 123 39.0
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 5.2e-09 65.1 122 36.9
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 5.2e-09 65.1 98 44.9
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 5.2e-09 65.1 138 36.2
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 5.2e-09 65.1 138 36.2
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 5.2e-09 65.1 148 31.8
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 6.8e-09 64.7 144 34.7
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 8.9e-09 64.3 160 36.2
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 8.9e-09 64.3 132 37.9
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 1.2e-08 63.9 157 35.7
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 1.2e-08 63.9 123 40.7
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.2e-08 63.9 115 37.4
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 1.5e-08 63.5 152 34.2
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 2.0e-08 63.2 127 37.8
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.4e-08 62.4 136 34.6
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 3.4e-08 62.4 153 37.3
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 3.4e-08 62.4 156 35.9
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 4.4e-08 62.0 148 32.4
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 4.4e-08 62.0 101 40.6
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 5.8e-08 61.6 154 33.1
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 5.8e-08 61.6 144 34.0
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 9.9e-08 60.8 146 34.9
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 9.9e-08 60.8 128 34.4
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 9.9e-08 60.8 148 33.1
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.3e-07 60.5 154 32.5
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.7e-07 60.1 135 32.6
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.7e-07 60.1 140 35.0
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.2e-07 59.7 160 34.4
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.2e-07 59.7 107 36.4
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 2.2e-07 59.7 150 32.0
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 2.2e-07 59.7 155 33.5
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.2e-07 59.7 139 32.4
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 2.9e-07 59.3 116 36.2
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 2.9e-07 59.3 155 32.9
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 2.9e-07 59.3 154 33.1
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 2.9e-07 59.3 149 30.9
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 3.8e-07 58.9 95 42.1
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.4e-07 58.2 115 33.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 6.4e-07 58.2 155 31.6
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 8.4e-07 57.8 130 36.9
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 8.4e-07 57.8 156 34.0
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.1e-06 57.4 155 32.9
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.4e-06 57.0 111 37.8
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.9e-06 56.6 137 35.8
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 2.4e-06 56.2 105 33.3
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 4.2e-06 55.5 103 38.8
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.2e-06 55.5 155 31.0
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 5.4e-06 55.1 89 39.3
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 5.4e-06 55.1 126 32.5
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 5.4e-06 55.1 164 31.1
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 5.4e-06 55.1 154 30.5
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 7.1e-06 54.7 153 31.4
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 7.1e-06 54.7 149 32.9
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 7.1e-06 54.7 150 34.0
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 9.2e-06 54.3 163 32.5


User provided reference genes

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