Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 6.9e-34 146.7 75 100.0
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.1e-22 108.6 62 90.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 8.0e-22 106.7 62 87.1
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 8.0e-22 106.7 62 87.1
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.4e-21 105.9 62 87.1
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.0e-21 104.8 62 87.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.7e-19 97.8 54 88.9
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.0e-16 89.7 67 68.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 6.5e-16 87.0 62 75.8
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 6.5e-16 87.0 62 77.4
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.5e-15 85.9 61 75.4
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.5e-15 85.9 62 75.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.9e-15 85.5 60 76.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.9e-15 85.5 62 74.2
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.5e-15 85.1 62 72.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 3.2e-15 84.7 60 76.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 4.2e-15 84.3 62 74.2
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.2e-15 83.6 62 72.6
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 7.2e-15 83.6 62 72.6
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 7.2e-15 83.6 62 72.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 7.2e-15 83.6 62 72.6
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 9.4e-15 83.2 62 72.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.2e-14 82.8 62 72.6
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-14 82.4 62 71.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.1e-14 82.0 62 71.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.6e-14 81.3 62 72.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.7e-14 80.9 61 70.5
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.1e-14 80.5 62 69.4
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.1e-14 80.5 62 69.4
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 6.1e-14 80.5 62 69.4
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 8.0e-14 80.1 62 69.4
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.0e-14 80.1 62 67.7
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 8.0e-14 80.1 61 70.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.0e-13 79.7 60 70.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.4e-13 79.3 60 70.0
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-13 79.3 62 69.4
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.8e-13 79.0 62 69.4
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.8e-13 79.0 62 69.4
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.8e-13 79.0 61 68.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-13 78.6 62 67.7
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.3e-13 78.6 62 67.7
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-13 78.6 62 67.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-13 78.6 62 67.7
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.3e-13 78.6 62 64.5
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 3.0e-13 78.2 62 67.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.0e-13 78.2 62 67.7
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 5.2e-13 77.4 62 67.7
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 5.2e-13 77.4 62 66.1
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 6.8e-13 77.0 62 64.5
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.8e-13 77.0 62 66.1
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 8.8e-13 76.6 68 63.2
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 8.8e-13 76.6 62 67.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 8.8e-13 76.6 61 67.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 8.8e-13 76.6 62 66.1
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 8.8e-13 76.6 57 71.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.8e-13 76.6 62 66.1
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-12 76.3 57 70.2
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.2e-12 76.3 61 67.2
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.5e-12 75.9 62 64.5
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 3.4e-12 74.7 62 66.1
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.4e-12 74.3 62 64.5
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.7e-12 73.9 62 62.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 5.7e-12 73.9 61 65.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 7.5e-12 73.6 62 62.9
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 7.5e-12 73.6 62 59.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 7.5e-12 73.6 62 62.9
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 7.5e-12 73.6 69 50.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.7e-12 73.2 62 66.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 9.7e-12 73.2 62 61.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.7e-12 73.2 62 62.9
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-11 72.8 59 66.1
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.3e-11 72.8 60 63.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.7e-11 72.4 57 64.9
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.7e-11 72.4 57 64.9
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.7e-11 72.4 57 64.9
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.7e-11 72.4 57 64.9
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.7e-11 72.4 57 64.9
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.7e-11 72.4 62 61.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 2.2e-11 72.0 57 64.9
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.2e-11 72.0 57 64.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.2e-11 72.0 57 64.9
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 2.8e-11 71.6 61 60.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.7e-11 71.2 52 71.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.7e-11 71.2 61 59.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 4.8e-11 70.9 57 64.9
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.8e-11 70.9 60 60.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 6.3e-11 70.5 57 64.9
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.3e-11 70.1 71 54.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.3e-11 70.1 71 54.9
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 8.3e-11 70.1 60 63.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.1e-10 69.7 52 71.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-10 69.7 61 63.9
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.4e-10 69.3 59 64.4
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.4e-10 68.6 60 63.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 4.1e-10 67.8 57 61.4
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.1e-10 67.8 61 62.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.1e-10 67.8 61 62.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.1e-10 67.8 61 62.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 5.3e-10 67.4 59 62.7
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 7.0e-10 67.0 52 69.2
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.1e-10 66.6 61 60.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.1e-10 66.6 60 60.0
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.1e-10 66.6 53 67.9
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.5e-09 64.7 51 68.6
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.5e-09 64.3 62 56.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.7e-09 63.5 60 61.7
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 8.5e-08 60.1 60 58.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.5e-07 58.5 60 56.7
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 7.2e-07 57.0 72 44.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.6e-06 55.8 43 69.8
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-06 55.8 43 69.8
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.7e-06 54.3 52 55.8
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.7e-06 54.3 52 55.8
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 8.0e-06 53.5 37 75.7


User provided reference genes

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