Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.5e-116 422.9 228 100.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 3.3e-63 245.7 146 89.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.7e-63 245.0 151 86.8
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 7.4e-63 244.6 146 89.0
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 3.7e-62 242.3 146 88.4
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.5e-58 230.3 151 81.5
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 6.1e-49 198.4 150 72.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.0e-43 181.0 146 69.2
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 3.8e-43 179.1 146 69.2
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.2e-41 174.1 142 68.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 8.0e-41 171.4 143 67.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.4e-40 170.6 142 69.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.8e-40 170.2 146 65.8
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.3e-40 169.9 142 68.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 3.0e-40 169.5 142 67.6
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.0e-40 169.1 149 60.4
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 6.8e-40 168.3 146 64.4
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.8e-40 167.9 142 66.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 8.8e-40 167.9 142 66.2
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.2e-39 167.5 133 71.4
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 4.4e-39 165.6 143 67.1
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 4.4e-39 165.6 142 66.2
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 7.5e-39 164.9 142 65.5
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 7.5e-39 164.9 142 65.5
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 7.5e-39 164.9 143 65.0
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.7e-38 163.7 143 63.6
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.7e-38 163.7 143 62.9
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.2e-38 163.3 143 63.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.9e-38 162.2 143 62.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.9e-38 162.2 143 62.9
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.3e-38 161.8 143 64.3
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.3e-38 161.4 142 64.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.3e-38 161.4 142 64.8
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.1e-37 161.0 142 64.1
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-37 160.6 145 62.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-37 159.8 143 63.6
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.4e-37 159.8 143 63.6
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.1e-37 159.5 158 56.3
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.1e-37 159.5 153 60.1
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 7.0e-37 158.3 146 59.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.0e-37 158.3 142 62.7
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 9.1e-37 157.9 142 62.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.6e-36 157.1 143 62.2
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.5e-36 156.0 142 59.9
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 4.5e-36 155.6 142 62.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.5e-36 155.6 143 62.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.5e-36 155.6 161 57.8
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.7e-36 154.8 143 60.1
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 7.7e-36 154.8 157 57.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.0e-35 154.5 142 59.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.7e-35 153.7 146 61.0
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 3.8e-35 152.5 143 59.4
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 8.6e-35 151.4 142 61.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 8.6e-35 151.4 152 57.9
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 8.6e-35 151.4 142 59.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.5e-34 149.8 142 63.4
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.5e-34 149.8 142 62.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.5e-34 149.8 146 58.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.5e-34 148.7 142 62.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.5e-34 147.9 143 59.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.6e-33 147.1 146 55.5
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.3e-32 143.3 142 60.6
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.0e-32 142.5 143 54.5
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.2e-31 141.0 120 64.2
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 5.7e-31 138.7 122 62.3
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.8e-31 137.9 137 59.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.7e-30 137.1 138 56.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 6.3e-30 135.2 145 51.7
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-29 134.0 119 64.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.8e-29 133.7 118 65.3
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.8e-29 133.7 142 57.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-28 130.2 112 66.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-28 130.2 112 66.1
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-28 130.2 112 66.1
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.7e-28 129.8 142 57.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.7e-28 129.8 119 58.8
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 3.5e-28 129.4 122 60.7
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.8e-28 128.3 131 55.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 7.8e-28 128.3 131 55.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.0e-27 127.9 154 49.4
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-27 127.5 112 65.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.3e-27 127.5 142 57.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-27 126.7 131 55.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.9e-27 126.3 120 60.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-27 125.9 131 55.0
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.6e-27 125.2 115 60.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.9e-26 123.6 139 54.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.9e-26 123.6 136 55.9
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.5e-26 123.2 146 50.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.5e-26 123.2 146 50.0
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.5e-26 123.2 142 54.2
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.5e-26 121.3 146 51.4
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.2e-25 120.9 126 56.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.6e-25 120.6 146 51.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.1e-25 120.2 142 54.2
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 4.7e-25 119.0 143 51.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 6.1e-25 118.6 141 52.5
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.0e-24 117.9 141 52.5
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.0e-24 117.9 141 52.5
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.0e-24 117.9 141 52.5
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.0e-24 117.9 141 52.5
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.0e-24 117.9 141 52.5
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.4e-24 117.5 136 53.7
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.8e-24 117.1 141 49.6
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.3e-24 116.7 141 51.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 3.1e-24 116.3 112 59.8
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.1e-24 116.3 135 54.1
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 4.0e-24 115.9 141 52.5
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 5.2e-24 115.5 136 53.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 6.8e-24 115.2 113 59.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.2e-23 114.4 136 52.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 3.4e-23 112.8 146 45.2
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.9e-22 109.8 151 47.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.1e-21 107.8 143 49.7
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.9e-21 107.1 62 90.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 9.2e-21 104.8 136 51.5
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 6.6e-19 98.6 151 39.1
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 4.0e-16 89.4 89 56.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-15 87.4 91 54.9
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-15 87.0 80 60.0
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.6e-15 86.7 112 50.0
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 3.4e-15 86.3 87 55.2
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 7.5e-15 85.1 98 54.1
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 7.1e-13 78.6 76 57.9
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.0e-11 74.7 68 58.8
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.9e-11 72.8 59 66.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-10 71.2 104 45.2
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.5e-10 68.2 104 43.3
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 6.2e-09 65.5 73 53.4
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-07 60.5 69 47.8
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-06 57.8 101 45.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.3e-06 57.8 101 45.5


User provided reference genes

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