Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1572.4 Capsicum annuum HOM05D033131 ORTHO05D020280 1.1e-90 336.7 170 100.0
PGSC0003DMG400038866 Solanum tuberosum HOM05D033131 ORTHO05D020280 1.5e-47 193.4 171 59.1
Solyc09g082610.1 Solanum lycopersicum HOM05D033131 ORTHO05D020280 2.1e-46 189.5 171 59.1
Solyc02g069330.2 Solanum lycopersicum HOM05D023375 ORTHO05D020280 4.2e-18 95.5 162 36.4
PGSC0003DMG400021148 Solanum tuberosum HOM05D023375 ORTHO05D020280 1.2e-17 94.0 163 35.6
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 9.9e-12 74.3 153 30.7
DCAR_023358 Daucus carota HOM05D001578 ORTHO05D001207 2.9e-11 72.8 97 39.2
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 6.4e-11 71.6 146 30.8
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 1.4e-10 70.5 145 30.3
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 2.4e-10 69.7 123 35.0
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 2.4e-10 69.7 149 31.5
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 5.4e-10 68.6 101 38.6
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 9.3e-10 67.8 145 27.6
Potri.010G209800 Populus trichocarpa HOM05D004113 ORTHO05D005233 9.3e-10 67.8 173 31.2
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.6e-09 67.0 146 30.1
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.6e-09 67.0 146 30.1
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.6e-09 67.0 130 33.8
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.6e-09 67.0 169 31.4
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 2.1e-09 66.6 125 35.2
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 2.1e-09 66.6 145 29.0
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 2.1e-09 66.6 117 35.9
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 2.7e-09 66.2 129 32.6
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 2.7e-09 66.2 134 31.3
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 3.5e-09 65.9 148 29.7
MD01G1038300 Malus domestica HOM05D004113 ORTHO05D005233 3.5e-09 65.9 149 34.2
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 3.5e-09 65.9 119 33.6
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 3.5e-09 65.9 146 30.1
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 4.6e-09 65.5 149 28.2
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 6.0e-09 65.1 145 30.3
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 6.0e-09 65.1 98 36.7
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 1.0e-08 64.3 163 28.8
CAN.G758.21 Capsicum annuum HOM05D000365 ORTHO05D000154 1.0e-08 64.3 151 27.2
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 1.0e-08 64.3 145 30.3
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.0e-08 64.3 147 29.9
FAN07G1428 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.0e-08 64.3 92 38.0
FAN12G0910 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.0e-08 64.3 92 38.0
CAN.G484.68 Capsicum annuum HOM05D001578 ORTHO05D001207 1.3e-08 63.9 133 34.6
Sabra10G0162100 Salix brachista HOM05D004113 ORTHO05D005233 1.3e-08 63.9 146 30.8
CiPaw.03G129200 Carya illinoinensis HOM05D004113 ORTHO05D005233 3.0e-08 62.8 117 34.2
Cc03_g00600 Coffea canephora HOM05D001578 ORTHO05D001207 3.9e-08 62.4 146 31.5
FvH4_4g20480 Fragaria vesca HOM05D001578 ORTHO05D001207 3.9e-08 62.4 92 37.0
PGSC0003DMG400004618 Solanum tuberosum HOM05D001578 ORTHO05D001207 3.9e-08 62.4 164 31.1
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 5.1e-08 62.0 102 36.3
FvH4_4g20510 Fragaria vesca HOM05D001578 ORTHO05D001207 5.1e-08 62.0 94 37.2
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 5.1e-08 62.0 130 32.3
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 6.7e-08 61.6 120 35.8
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 6.7e-08 61.6 150 30.0
TAR628G1510 Trochodendron aralioides HOM05D004113 ORTHO05D005233 6.7e-08 61.6 129 31.0
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 8.7e-08 61.2 97 35.1
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.7e-08 61.2 153 32.0
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.7e-08 61.2 153 32.0
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 8.7e-08 61.2 128 32.8
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 8.7e-08 61.2 129 29.5
Actinidia18465 Actinidia chinensis HOM05D001578 ORTHO05D001207 1.1e-07 60.8 118 31.4
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.1e-07 60.8 117 35.0
Peaxi162Scf01160g00142 Petunia axillaris HOM05D001578 ORTHO05D001207 1.1e-07 60.8 133 35.3
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 1.9e-07 60.1 120 31.7
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 1.9e-07 60.1 138 34.1
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 1.9e-07 60.1 157 33.1
Migut.H00735 Erythranthe guttata HOM05D004113 ORTHO05D005233 1.9e-07 60.1 146 27.4
MD15G1314600 Malus domestica HOM05D004113 ORTHO05D005233 1.9e-07 60.1 124 33.1
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 1.9e-07 60.1 127 32.3
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.9e-07 60.1 91 36.3
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.5e-07 59.7 94 35.1
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 2.5e-07 59.7 127 32.3
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 3.3e-07 59.3 131 31.3
Nitab4.5_0001270g0060 Nicotiana tabacum HOM05D004113 ORTHO05D005233 3.3e-07 59.3 170 27.6
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 3.3e-07 59.3 144 31.2
PGSC0003DMG400037039 Solanum tuberosum HOM05D004113 ORTHO05D005233 3.3e-07 59.3 132 30.3
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 4.3e-07 58.9 123 30.9
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.3e-07 58.9 143 29.4
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.6e-07 58.5 94 34.0
Migut.L00890 Erythranthe guttata HOM05D004113 ORTHO05D005233 5.6e-07 58.5 143 30.1
Lj1g0003494 Lotus japonicus HOM05D004113 ORTHO05D005233 5.6e-07 58.5 77 37.7
Nitab4.5_0004809g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 5.6e-07 58.5 164 25.0
Cfa002816 Carpinus fangiana HOM05D004113 ORTHO05D005233 7.4e-07 58.2 138 31.9
Lalb_Chr00c34g0408621 Lupinus albus HOM05D004113 ORTHO05D005233 7.4e-07 58.2 110 32.7
Lalb_Chr12g0203181 Lupinus albus HOM05D004113 ORTHO05D005233 7.4e-07 58.2 110 32.7
Solyc12g099200.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 7.4e-07 58.2 135 35.6
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 7.4e-07 58.2 96 32.3
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 9.6e-07 57.8 147 29.9
Solyc12g099210.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 9.6e-07 57.8 135 31.9
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 1.3e-06 57.4 147 28.6
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.3e-06 57.4 102 33.3
Sopen12g033880 Solanum pennellii HOM05D001578 ORTHO05D001207 1.3e-06 57.4 129 34.9
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.6e-06 57.0 98 33.7
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 1.6e-06 57.0 135 34.1
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.6e-06 57.0 143 28.0
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.6e-06 57.0 145 27.6
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.6e-06 57.0 121 30.6
PGSC0003DMG400004617 Solanum tuberosum HOM05D001578 ORTHO05D001207 1.6e-06 57.0 134 33.6
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 1.6e-06 57.0 122 28.7
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-06 56.6 97 34.0
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-06 56.6 97 34.0
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 2.1e-06 56.6 127 33.1
Migut.M01936 Erythranthe guttata HOM05D001578 ORTHO05D001207 2.1e-06 56.6 150 26.7
Eucgr.H04069 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.1e-06 56.6 133 30.8
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 2.1e-06 56.6 136 29.4
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 2.1e-06 56.6 169 24.9
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 2.8e-06 56.2 167 25.7
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 2.8e-06 56.2 102 30.4
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 2.8e-06 56.2 97 33.0
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 2.8e-06 56.2 143 28.0
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 3.7e-06 55.8 128 28.9
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 3.7e-06 55.8 146 26.7
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 3.7e-06 55.8 114 30.7
Eucgr.L02839 Eucalyptus grandis HOM05D001578 ORTHO05D001207 4.8e-06 55.5 117 31.6
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 6.2e-06 55.1 126 34.1
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 6.2e-06 55.1 146 29.5
Haze_25111 Corylus avellana HOM05D004113 ORTHO05D005233 6.2e-06 55.1 143 30.8
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 6.2e-06 55.1 162 28.4
Hma1.2p1_0528F.1_g173060 Hydrangea macrophylla HOM05D004113 ORTHO05D005233 6.2e-06 55.1 98 34.7
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 8.1e-06 54.7 148 26.4
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 8.1e-06 54.7 147 27.9
HanXRQChr12g0368871 Helianthus annuus HOM05D004113 ORTHO05D005233 8.1e-06 54.7 117 31.6
TPR.G25399 Trifolium pratense HOM05D001578 ORTHO05D001207 8.1e-06 54.7 151 28.5


User provided reference genes

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