Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1563.2 Capsicum annuum HOM05D001318 ORTHO05D001152 1.0e-70 270.0 138 100.0
CAN.G2289.3 Capsicum annuum HOM05D001318 ORTHO05D001152 3.6e-44 181.8 105 86.7
CAN.G743.2 Capsicum annuum HOM05D001318 ORTHO05D001152 1.0e-43 180.3 105 87.6
CAN.G1783.1 Capsicum annuum HOM05D001318 ORTHO05D001152 1.0e-35 153.7 79 94.9
CAN.G567.116 Capsicum annuum HOM05D000696 ORTHO05D001152 3.7e-17 92.0 49 87.8
CAN.G2314.2 Capsicum annuum HOM05D000002 ORTHO05D000001 8.3e-17 90.9 49 89.8
CAN.G6546.1 Capsicum annuum HOM05D001318 ORTHO05D001152 8.3e-17 90.9 49 89.8
CAN.G1563.8 Capsicum annuum HOM05D001318 ORTHO05D001152 2.4e-16 89.4 49 87.8
CAN.G551.3 Capsicum annuum HOM05D001318 ORTHO05D001152 2.4e-16 89.4 49 87.8
CAN.G1703.2 Capsicum annuum HOM05D001318 ORTHO05D001152 9.2e-16 87.4 49 85.7
Peaxi162Scf00349g00037 Petunia axillaris HOM05D001318 ORTHO05D001152 9.2e-16 87.4 49 85.7
Nitab4.5_0000551g0280 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.2e-15 87.0 49 85.7
Nitab4.5_0015263g0010 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.2e-15 87.0 49 85.7
Solyc01g005640.4 Solanum lycopersicum HOM05D001318 ORTHO05D001152 1.6e-15 86.7 49 83.7
Sopen01g001660 Solanum pennellii HOM05D001318 ORTHO05D001152 1.6e-15 86.7 49 83.7
CAN.G6136.1 Capsicum annuum HOM05D001318 ORTHO05D001152 2.7e-15 85.9 49 85.7
CAN.G10788.1 Capsicum annuum HOM05D001318 ORTHO05D001152 3.5e-15 85.5 49 85.7
CAN.G2177.1 Capsicum annuum HOM05D001318 ORTHO05D001152 3.5e-15 85.5 49 83.7
CAN.G567.120 Capsicum annuum HOM05D002518 ORTHO05D002630 6.0e-15 84.7 62 71.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 7.8e-15 84.3 49 83.7
PGSC0003DMG400032127 Solanum tuberosum HOM05D001318 ORTHO05D001152 1.0e-14 84.0 49 79.6
PGR031G3066 Punica granatum HOM05D001318 ORTHO05D001152 1.2e-12 77.0 73 56.2
CAN.G610.14 Capsicum annuum HOM05D000072 ORTHO05D000026 1.6e-12 76.6 52 76.9
Haze_20195 Corylus avellana HOM05D001318 ORTHO05D001152 2.1e-12 76.3 63 58.7
Peaxi162Scf01378g00012 Petunia axillaris HOM05D001318 ORTHO05D001152 2.1e-12 76.3 54 68.5
Nitab4.5_0000571g0130 Nicotiana tabacum HOM05D001318 ORTHO05D001152 2.8e-12 75.9 54 66.7
Nitab4.5_0001364g0010 Nicotiana tabacum HOM05D001318 ORTHO05D001152 2.8e-12 75.9 54 66.7
CAN.G641.72 Capsicum annuum HOM05D001318 ORTHO05D001152 3.6e-12 75.5 54 66.7
Dinv30169 Davidia involucrata HOM05D001318 ORTHO05D001152 3.6e-12 75.5 52 69.2
PGSC0003DMG400029851 Solanum tuberosum HOM05D001318 ORTHO05D001152 3.6e-12 75.5 54 66.7
Duzib128G1139 Durio zibethinus HOM05D001318 ORTHO05D001152 1.1e-11 73.9 46 73.9
Eucgr.A02260 Eucalyptus grandis HOM05D001318 ORTHO05D001152 1.1e-11 73.9 54 63.0
Solyc10g079710.3 Solanum lycopersicum HOM05D001318 ORTHO05D001152 1.1e-11 73.9 54 64.8
Sopen10g030340 Solanum pennellii HOM05D001318 ORTHO05D001152 1.1e-11 73.9 54 64.8
vmacro09029 Vaccinium macrocarpon HOM05D001318 ORTHO05D001152 1.1e-11 73.9 52 65.4
Gohir.A11G308000 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.3e-11 72.8 46 71.7
Gohir.D11G323400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.3e-11 72.8 46 71.7
Gorai.007G353400 Gossypium raimondii HOM05D001318 ORTHO05D001152 2.3e-11 72.8 46 71.7
Cfa020022 Carpinus fangiana HOM05D001318 ORTHO05D001152 3.1e-11 72.4 78 48.7
Ciclev10021153m.g Citrus clementina HOM05D001318 ORTHO05D001152 4.0e-11 72.0 49 69.4
MD00G1088600 Malus domestica HOM05D001318 ORTHO05D001152 5.2e-11 71.6 66 57.6
ClCG10G016080 Citrullus lanatus HOM05D001318 ORTHO05D001152 6.8e-11 71.2 66 54.5
MELO3C009771.2 Cucumis melo HOM05D001318 ORTHO05D001152 6.8e-11 71.2 66 54.5
Potri.006G041200 Populus trichocarpa HOM05D001318 ORTHO05D001152 8.9e-11 70.9 51 66.7
CAN.G2141.1 Capsicum annuum HOM05D001318 ORTHO05D001152 1.2e-10 70.5 38 86.8
Nitab4.5_0002208g0090 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.5e-10 70.1 67 56.7
Sed0006150 Sechium edule HOM05D001318 ORTHO05D001152 1.5e-10 70.1 49 65.3
Thecc.05G138800 Theobroma cacao HOM05D001318 ORTHO05D001152 1.5e-10 70.1 46 69.6
Atru.chr1.1492 Acer truncatum HOM05D001318 ORTHO05D001152 2.0e-10 69.7 49 69.4
Cc01_g00850 Coffea canephora HOM05D001318 ORTHO05D001152 2.0e-10 69.7 53 64.2
THA.LOC104826888 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 2.0e-10 69.7 44 70.5
CiPaw.09G046200 Carya illinoinensis HOM05D001318 ORTHO05D001152 2.6e-10 69.3 61 57.4
THA.LOC104823210 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 2.6e-10 69.3 44 68.2
Actinidia38153 Actinidia chinensis HOM05D001318 ORTHO05D001152 3.4e-10 68.9 49 65.3
Duzib106G0060 Durio zibethinus HOM05D001318 ORTHO05D001152 3.4e-10 68.9 46 67.4
Nitab4.5_0002162g0070 Nicotiana tabacum HOM05D001318 ORTHO05D001152 4.4e-10 68.6 46 71.7
Peaxi162Scf01029g00213 Petunia axillaris HOM05D001318 ORTHO05D001152 4.4e-10 68.6 66 54.5
CAN.G610.12 Capsicum annuum HOM05D000072 ORTHO05D000026 5.8e-10 68.2 56 64.3
CsaV3_3G040350 Cucumis sativus L. HOM05D001318 ORTHO05D001152 5.8e-10 68.2 66 53.0
Duzib093G0720 Durio zibethinus HOM05D001318 ORTHO05D001152 7.5e-10 67.8 46 69.6
Oeu008212.1 Olea europaea HOM05D001318 ORTHO05D001152 7.5e-10 67.8 49 63.3
Cc06_g18910 Coffea canephora HOM05D001318 ORTHO05D001152 9.8e-10 67.4 46 63.0
PSO339G2631 Papaver somniferum HOM05D001318 ORTHO05D001152 9.8e-10 67.4 55 60.0
Peaxi162Scf00970g00160 Petunia axillaris HOM05D001318 ORTHO05D001152 9.8e-10 67.4 49 67.3
Glyma.03G129900 Glycine max HOM05D001318 ORTHO05D001152 1.7e-09 66.6 55 56.4
Nitab4.5_0000827g0090 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.7e-09 66.6 49 67.3
Prupe.7G042200 Prunus persica HOM05D001318 ORTHO05D001152 1.7e-09 66.6 72 51.4
Glyma.19G132200 Glycine max HOM05D001318 ORTHO05D001152 2.2e-09 66.2 55 56.4
Sabra16G0040000 Salix brachista HOM05D001318 ORTHO05D001152 2.2e-09 66.2 51 62.7
Sabra16G0044700 Salix brachista HOM05D001318 ORTHO05D001152 2.2e-09 66.2 51 62.7
Sed0016807 Sechium edule HOM05D001318 ORTHO05D001152 2.2e-09 66.2 49 59.2
TAR633G2548 Trochodendron aralioides HOM05D001318 ORTHO05D001152 2.2e-09 66.2 112 37.5
CSS0040626 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 2.9e-09 65.9 41 75.6
Sabra06G0028000 Salix brachista HOM05D001318 ORTHO05D001152 2.9e-09 65.9 51 62.7
COL.COLO4_05694 Corchorus olitorius HOM05D001318 ORTHO05D001152 3.7e-09 65.5 45 66.7
Dinv08513 Davidia involucrata HOM05D001318 ORTHO05D001152 4.9e-09 65.1 66 53.0
PSO384G1334 Papaver somniferum HOM05D001318 ORTHO05D001152 4.9e-09 65.1 49 63.3
Phvul.001G125700 Phaseolus vulgaris HOM05D001318 ORTHO05D001152 4.9e-09 65.1 51 58.8
QL07p008869 Quercus lobata HOM05D001318 ORTHO05D001152 4.9e-09 65.1 72 47.2
VMungo1383G1291 Vigna mungo HOM05D001318 ORTHO05D001152 4.9e-09 65.1 51 58.8
CAN.G641.51 Capsicum annuum HOM05D001318 ORTHO05D001152 6.4e-09 64.7 51 60.8
Lalb_Chr25g0286881 Lupinus albus HOM05D001318 ORTHO05D001152 6.4e-09 64.7 56 53.6
Rhsim04G0110700 Rhododendron simsii HOM05D001318 ORTHO05D001152 6.4e-09 64.7 63 57.1
Manes.09G006900 Manihot esculenta HOM05D001318 ORTHO05D001152 8.3e-09 64.3 49 65.3
Oeu004591.1 Olea europaea HOM05D001318 ORTHO05D001152 8.3e-09 64.3 49 59.2
Oeu063774.1 Olea europaea HOM05D001318 ORTHO05D001152 8.3e-09 64.3 49 57.1
Sp6g38650 Schrenkiella parvula HOM05D001318 ORTHO05D001152 8.3e-09 64.3 62 51.6
Thhalv10021137m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 1.1e-08 63.9 61 52.5
Migut.K00130 Erythranthe guttata HOM05D001318 ORTHO05D001152 1.4e-08 63.5 53 54.7
GSVIVG01033609001 Vitis vinifera HOM05D001318 ORTHO05D001152 1.4e-08 63.5 66 51.5
CARHR209170 Cardamine hirsuta HOM05D001318 ORTHO05D001152 1.9e-08 63.2 62 50.0
FvH4_6g25280 Fragaria vesca HOM05D001318 ORTHO05D001152 1.9e-08 63.2 49 59.2
FAN09G0850 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.9e-08 63.2 49 59.2
AT3G10250 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 2.4e-08 62.8 46 58.7
arahy.Tifrunner.gnm1.ann1.67YT7N Arachis hypogaea HOM05D001318 ORTHO05D001152 2.4e-08 62.8 55 54.5
arahy.Tifrunner.gnm1.ann1.8618U7 Arachis hypogaea HOM05D001318 ORTHO05D001152 2.4e-08 62.8 55 54.5
MSTRG.26151 Avicennia marina HOM05D001318 ORTHO05D001152 2.4e-08 62.8 46 60.9
Carub.0003s0942 Capsella rubella HOM05D001318 ORTHO05D001152 2.4e-08 62.8 46 58.7
FAN05G0449 Fragaria x ananassa HOM05D001318 ORTHO05D001152 3.2e-08 62.4 49 59.2
Nitab4.5_0000515g0050 Nicotiana tabacum HOM05D001318 ORTHO05D001152 3.2e-08 62.4 46 67.4
Nitab4.5_0010129g0010 Nicotiana tabacum HOM05D001318 ORTHO05D001152 3.2e-08 62.4 46 67.4
RcHm_v2.0_Chr2g0125341 Rosa chinensis HOM05D001318 ORTHO05D001152 3.2e-08 62.4 49 59.2
FAN02G2982 Fragaria x ananassa HOM05D001318 ORTHO05D001152 4.1e-08 62.0 70 48.6
Lalb_Chr01g0017181 Lupinus albus HOM05D001318 ORTHO05D001152 4.1e-08 62.0 55 52.7
TWI77G0987 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 4.1e-08 62.0 49 59.2
Carub.0006s0305 Capsella rubella HOM05D001318 ORTHO05D001152 5.4e-08 61.6 61 50.8
Solyc10g079590.1 Solanum lycopersicum HOM05D001318 ORTHO05D001152 5.4e-08 61.6 78 43.6
Sopen10g030230 Solanum pennellii HOM05D001318 ORTHO05D001152 5.4e-08 61.6 78 43.6
Oeu008057.1 Olea europaea HOM05D001318 ORTHO05D001152 7.1e-08 61.2 79 43.0
Sp3g08520 Schrenkiella parvula HOM05D001318 ORTHO05D001152 7.1e-08 61.2 61 50.8
TWI74G0127 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 7.1e-08 61.2 49 57.1
CARHR084730 Cardamine hirsuta HOM05D001318 ORTHO05D001152 9.2e-08 60.8 44 56.8
Thhalv10014351m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 1.2e-07 60.5 46 56.5
Oeu023037.1 Olea europaea HOM05D001318 ORTHO05D001152 1.2e-07 60.5 72 44.4
Os02g0137100 Oryza sativa ssp. japonica HOM05D001318 ORTHO05D001152 1.6e-07 60.1 48 52.1
TAR636G0484 Trochodendron aralioides HOM05D001318 ORTHO05D001152 1.6e-07 60.1 56 53.6
MD12G1093600 Malus domestica HOM05D001318 ORTHO05D001152 2.1e-07 59.7 49 59.2
QL07p008880 Quercus lobata HOM05D001318 ORTHO05D001152 2.1e-07 59.7 60 48.3
AL3G21580 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 2.7e-07 59.3 46 56.5
A05p38860 Brassica napus HOM05D001318 ORTHO05D001152 2.7e-07 59.3 58 44.8
BraA05t22678Z Brassica rapa HOM05D001318 ORTHO05D001152 2.7e-07 59.3 58 44.8
ECA248G0665 Erigeron canadensis HOM05D001318 ORTHO05D001152 2.7e-07 59.3 61 49.2
Gorai.003G088900 Gossypium raimondii HOM05D001318 ORTHO05D001152 3.5e-07 58.9 48 56.2
Aqoxy1G00355 Aquilegia oxysepala HOM05D001318 ORTHO05D001152 4.6e-07 58.5 58 53.4
Aqoxy2G00354 Aquilegia oxysepala HOM05D001318 ORTHO05D001152 4.6e-07 58.5 50 54.0
AT5G04090 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 4.6e-07 58.5 61 49.2
Migut.J01672 Erythranthe guttata HOM05D001318 ORTHO05D001152 4.6e-07 58.5 42 61.9
Gohir.D03G071100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 4.6e-07 58.5 48 56.2
Zm00001eb231790 Zea mays HOM05D001318 ORTHO05D001152 4.6e-07 58.5 48 52.1
Cpa.g.sc5.211 Carica papaya HOM05D001318 ORTHO05D001152 6.0e-07 58.2 40 65.0
SalBow1G1179 Salvia bowleyana HOM05D001318 ORTHO05D001152 6.0e-07 58.2 42 61.9
Actinidia32315 Actinidia chinensis HOM05D001318 ORTHO05D001152 7.8e-07 57.8 46 63.0
Nn7g36658 Nelumbo nucifera HOM05D001318 ORTHO05D001152 7.8e-07 57.8 55 52.7
MSTRG.6379 Avicennia marina HOM05D001318 ORTHO05D001152 1.0e-06 57.4 70 47.1
C05p57900 Brassica napus HOM05D001318 ORTHO05D001152 1.0e-06 57.4 48 50.0
BolC5t34445H Brassica oleracea HOM05D001318 ORTHO05D001152 1.0e-06 57.4 48 50.0
Gohir.A02G112715 Gossypium hirsutum HOM05D001318 ORTHO05D001152 1.0e-06 57.4 58 53.4
HanXRQChr13g0392951 Helianthus annuus HOM05D001318 ORTHO05D001152 1.0e-06 57.4 61 47.5
Oeu059662.3 Olea europaea HOM05D001318 ORTHO05D001152 1.0e-06 57.4 51 52.9
BcaB04g21220 Brassica carinata HOM05D001318 ORTHO05D001152 1.3e-06 57.0 44 56.8
A01p41960 Brassica napus HOM05D001318 ORTHO05D001152 1.3e-06 57.0 43 55.8
BolC1t05411H Brassica oleracea HOM05D001318 ORTHO05D001152 1.3e-06 57.0 43 55.8
BolC1t05412H Brassica oleracea HOM05D001318 ORTHO05D001152 1.3e-06 57.0 43 55.8
BraA01t04263Z Brassica rapa HOM05D001318 ORTHO05D001152 1.3e-06 57.0 43 55.8
PGSC0003DMG400029840 Solanum tuberosum HOM05D001318 ORTHO05D001152 2.3e-06 56.2 47 57.4
Sed0001996 Sechium edule HOM05D001318 ORTHO05D001152 3.0e-06 55.8 51 49.0
MSTRG.10795 Avicennia marina HOM05D001318 ORTHO05D001152 3.9e-06 55.5 41 61.0
Oeu029497.1 Olea europaea HOM05D001318 ORTHO05D001152 3.9e-06 55.5 56 53.6
unitig_8.g4559 Utricularia gibba HOM05D001318 ORTHO05D001152 5.1e-06 55.1 65 43.1
Lsat_1_v5_gn_6_52880 Lactuca sativa HOM05D001318 ORTHO05D001152 6.6e-06 54.7 72 48.6
Nn2g14861 Nelumbo nucifera HOM05D001318 ORTHO05D001152 6.6e-06 54.7 49 55.1
AL6G13720 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 8.6e-06 54.3 61 47.5
SGA_v2.0_scaffold69G23143 Striga asiatica HOM05D001318 ORTHO05D001152 8.6e-06 54.3 46 58.7


User provided reference genes

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