Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.5e-124 449.5 222 100.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.5e-113 411.4 228 88.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-112 409.8 222 88.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.2e-112 409.1 222 87.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-112 408.7 222 89.6
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.3e-109 399.1 224 87.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.0e-101 372.1 224 80.8
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.0e-61 238.8 219 53.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.0e-61 238.8 219 53.4
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.8e-61 238.0 220 53.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.8e-59 232.6 222 51.8
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.4e-58 229.6 219 53.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.2e-57 227.3 219 53.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.7e-57 226.1 219 53.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.7e-57 224.6 221 53.4
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 5.0e-56 221.9 213 50.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 6.6e-56 221.5 222 51.4
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 8.6e-56 221.1 219 52.5
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.3e-55 218.8 220 50.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 9.5e-55 217.6 219 51.1
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.6e-54 216.9 222 49.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.6e-54 215.7 221 49.3
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.6e-54 215.7 221 49.3
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.7e-54 215.3 221 49.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 8.0e-54 214.5 219 50.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.0e-53 214.2 219 51.6
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.4e-53 213.8 222 50.9
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.8e-53 213.4 220 51.4
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.8e-53 213.4 217 51.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.0e-53 212.2 221 50.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 6.8e-53 211.5 219 50.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.2e-52 210.7 221 48.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.6e-52 209.5 219 49.8
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.4e-52 208.8 221 47.5
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 5.7e-52 208.4 220 50.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 7.5e-52 208.0 223 48.0
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.8e-52 207.6 225 48.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.2e-51 206.5 216 50.0
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.7e-51 205.7 219 48.9
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 6.4e-51 204.9 224 47.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-50 204.1 219 47.0
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.1e-50 204.1 225 45.3
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.4e-50 203.8 220 49.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.8e-50 203.4 210 50.0
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.8e-50 203.4 219 47.9
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 4.1e-50 202.2 220 47.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 4.1e-50 202.2 221 48.9
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.1e-50 202.2 221 48.9
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 5.4e-50 201.8 215 48.8
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.0e-50 201.4 220 47.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 9.2e-50 201.1 222 46.8
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.6e-49 200.3 223 46.6
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.0e-49 199.9 214 49.1
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-49 199.9 220 46.8
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 2.0e-49 199.9 224 47.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.7e-49 199.5 220 46.8
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.5e-49 199.1 220 46.4
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.7e-48 196.8 214 48.6
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.3e-48 196.4 197 51.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 3.0e-48 196.1 223 46.2
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 5.0e-48 195.3 222 46.4
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.6e-48 194.9 219 47.9
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 6.6e-48 194.9 228 46.9
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-47 194.1 213 45.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.9e-47 193.4 219 47.0
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.5e-47 193.0 213 48.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-47 193.0 219 46.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.3e-47 192.6 213 47.9
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.3e-47 192.2 222 45.5
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.3e-47 192.2 220 48.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 7.3e-47 191.4 218 48.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.5e-47 191.0 216 47.2
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 9.5e-47 191.0 220 46.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.2e-46 190.7 223 45.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-46 190.7 213 48.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.6e-46 190.3 213 46.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.6e-46 190.3 216 47.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.1e-46 189.9 224 47.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-46 189.5 213 48.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-46 189.1 213 48.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.6e-46 189.1 213 48.8
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.6e-46 189.1 216 46.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 6.2e-46 188.3 213 49.3
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 8.0e-46 188.0 224 46.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-45 187.6 222 50.5
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.0e-45 187.6 158 53.8
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.0e-45 185.7 220 45.0
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.2e-45 185.3 218 47.7
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.2e-45 185.3 219 46.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 6.8e-45 184.9 215 46.0
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 8.9e-45 184.5 227 46.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.0e-44 183.3 215 47.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.6e-44 183.0 218 47.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.4e-44 182.6 165 51.5
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.4e-44 182.2 215 44.7
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.4e-44 182.2 214 44.9
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 4.4e-44 182.2 221 47.1
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 5.8e-44 181.8 208 47.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.8e-44 181.8 217 47.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.8e-44 181.8 213 45.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 7.5e-44 181.4 214 45.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 7.5e-44 181.4 213 45.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.7e-43 180.3 213 45.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 2.2e-43 179.9 205 48.8
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.9e-43 179.5 217 45.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.7e-43 179.1 213 46.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.7e-43 179.1 217 45.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 4.9e-43 178.7 213 46.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 4.9e-43 178.7 213 46.9
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.4e-43 178.3 214 44.4
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 8.3e-43 177.9 200 49.0
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.3e-43 177.9 219 44.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-42 177.6 219 45.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-42 177.6 215 44.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-42 177.6 236 40.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.1e-42 177.6 222 45.5
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.4e-42 177.2 213 45.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-42 176.8 184 51.1
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.4e-42 176.4 222 41.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-42 176.4 203 46.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.2e-42 176.0 219 44.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.2e-42 176.0 201 47.8
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.1e-42 175.6 217 44.7
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 9.2e-42 174.5 167 49.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.2e-41 174.1 213 44.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.0e-41 173.3 218 46.3
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-41 173.3 221 43.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.7e-41 172.9 221 43.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.8e-41 171.4 144 56.2
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-40 170.2 224 44.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.3e-40 169.9 217 45.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.3e-40 169.9 215 45.1
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.3e-40 169.9 215 45.1
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.0e-40 169.5 226 44.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.9e-40 169.1 216 46.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.9e-39 166.8 234 42.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 4.3e-39 165.6 220 43.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 7.3e-39 164.9 219 44.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 7.3e-39 164.9 135 58.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-38 164.1 201 44.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.8e-38 162.9 173 49.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-38 162.5 221 43.4
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.7e-38 162.2 214 42.5
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-37 161.0 173 49.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.3e-37 159.8 165 47.3
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.1e-37 159.5 184 45.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.0e-37 159.1 190 50.5
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.4e-36 156.0 187 47.1
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-35 153.3 144 50.7
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.2e-35 153.3 221 38.9
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-35 152.5 213 38.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 6.4e-35 151.8 245 40.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 8.3e-35 151.4 219 40.2
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-34 150.6 201 42.8
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 9.2e-34 147.9 153 49.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.6e-33 147.1 160 46.9
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.8e-33 144.8 163 47.9
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 8.6e-32 141.4 220 39.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 8.6e-32 141.4 122 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 6.2e-30 135.2 225 37.8
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 3.1e-29 132.9 182 42.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.2e-28 131.0 108 52.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.4e-28 129.0 213 38.5
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.9e-27 126.3 222 36.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 8.6e-24 114.8 139 46.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.9e-23 113.6 159 42.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.2e-21 105.5 265 29.4
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 5.2e-21 105.5 214 35.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.2e-20 104.4 74 60.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-20 104.0 216 35.2
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-20 103.2 86 55.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-19 98.6 228 33.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 6.4e-19 98.6 228 33.3
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 7.1e-18 95.1 213 33.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.1e-17 93.6 215 32.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 6.2e-14 82.0 55 65.5
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.2e-11 73.6 52 63.5
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.2e-10 69.7 46 63.0


User provided reference genes

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