Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 3.7e-80 301.6 164 100.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 3.2e-60 235.3 166 83.1
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 4.5e-54 214.9 166 77.1
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 4.5e-54 214.9 166 77.1
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 2.3e-53 212.6 147 81.0
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.6e-51 206.5 143 80.4
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 4.3e-44 181.8 166 65.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 6.1e-43 177.9 147 69.4
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.0e-42 177.2 127 78.7
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 9.8e-41 170.6 149 65.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.3e-40 170.2 142 64.8
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 3.7e-40 168.7 154 64.9
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.4e-39 166.8 121 69.4
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.8e-39 166.4 167 58.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.2e-39 165.6 146 62.3
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 5.4e-39 164.9 166 59.6
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.2e-38 163.7 163 58.9
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 2.0e-38 162.9 171 57.9
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 2.0e-38 162.9 171 57.9
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.7e-38 162.5 142 64.8
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 4.6e-38 161.8 167 59.3
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 7.8e-38 161.0 131 66.4
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.0e-37 160.6 167 60.5
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.3e-37 159.5 137 60.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.3e-37 159.5 140 64.3
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 3.0e-37 159.1 165 58.8
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.0e-37 159.1 138 60.9
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.1e-36 157.1 167 56.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.9e-36 156.4 142 60.6
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.9e-36 156.4 169 58.0
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 2.5e-36 156.0 126 61.9
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.5e-36 156.0 126 61.9
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 3.3e-36 155.6 145 59.3
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 4.3e-36 155.2 156 57.1
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 5.6e-36 154.8 165 58.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 7.3e-36 154.5 146 58.9
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 7.3e-36 154.5 142 58.5
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 9.5e-36 154.1 141 58.2
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.2e-35 153.7 156 55.8
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.6e-35 153.3 164 55.5
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.1e-35 152.9 113 69.0
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 6.2e-35 151.4 160 56.2
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 6.2e-35 151.4 167 55.7
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.1e-34 150.6 166 54.8
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.1e-34 150.6 141 60.3
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.1e-34 150.6 166 51.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.1e-34 150.6 126 68.3
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.4e-34 150.2 156 55.1
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 2.3e-34 149.4 140 58.6
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.1e-34 149.1 148 56.1
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 3.1e-34 149.1 154 55.8
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 3.1e-34 149.1 153 52.9
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.1e-34 149.1 154 53.9
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 4.0e-34 148.7 150 56.0
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 5.2e-34 148.3 142 59.9
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 8.9e-34 147.5 150 55.3
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.2e-33 147.1 123 61.8
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.2e-33 147.1 128 64.8
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.0e-33 146.4 155 54.2
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 2.6e-33 146.0 138 58.0
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.6e-33 146.0 183 52.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 3.4e-33 145.6 135 59.3
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 4.4e-33 145.2 162 51.9
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.4e-33 145.2 167 53.9
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 5.8e-33 144.8 137 58.4
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.8e-33 144.8 111 65.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 9.8e-33 144.1 165 52.1
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.3e-32 143.7 177 52.5
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.3e-32 143.7 167 52.7
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.7e-32 143.3 119 58.8
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.7e-32 143.3 157 53.5
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 2.2e-32 142.9 156 53.8
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 2.9e-32 142.5 130 58.5
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 2.9e-32 142.5 130 58.5
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 2.9e-32 142.5 157 51.6
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.7e-32 142.1 147 55.1
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 4.9e-32 141.7 130 58.5
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.1e-31 140.6 156 53.8
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.9e-31 139.8 153 56.9
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.9e-31 139.8 167 53.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.9e-31 139.8 156 51.9
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 1.9e-31 139.8 172 51.7
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 2.4e-31 139.4 169 50.9
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 3.2e-31 139.0 152 53.3
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 7.0e-31 137.9 160 55.6
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 7.0e-31 137.9 140 55.0
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.2e-30 137.1 130 56.2
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-30 136.7 177 48.6
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 2.7e-30 136.0 159 52.8
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 3.5e-30 135.6 139 54.7
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 7.8e-30 134.4 168 51.2
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.3e-29 133.7 138 55.1
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-29 133.7 155 52.9
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-29 133.7 155 52.9
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-29 133.7 155 52.9
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-29 133.7 155 52.9
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 1.3e-29 133.7 155 52.9
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.7e-29 133.3 125 58.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 2.3e-29 132.9 147 53.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 2.3e-29 132.9 155 52.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 3.0e-29 132.5 182 46.2
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.0e-29 132.5 163 49.7
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.0e-29 131.7 114 61.4
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 5.0e-29 131.7 167 46.7
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 5.0e-29 131.7 157 47.1
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 6.6e-29 131.3 149 54.4
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.9e-28 129.8 118 58.5
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-28 129.4 155 52.3
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-28 129.4 151 51.7
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 3.3e-28 129.0 165 49.7
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 4.3e-28 128.6 148 54.1
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 4.3e-28 128.6 133 57.1
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 9.5e-28 127.5 159 51.6
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 9.5e-28 127.5 179 46.9
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 3.6e-27 125.6 121 56.2
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.7e-27 125.2 155 51.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.7e-27 125.2 167 50.3
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.3e-26 122.9 154 49.4
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.9e-25 117.5 138 55.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.7e-24 116.7 159 45.3
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.7e-24 116.7 151 49.0
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 6.4e-24 114.8 143 47.6
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.1e-23 111.3 151 49.7
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.6e-22 110.2 149 45.0
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 5.1e-21 105.1 146 45.2
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.4e-18 96.3 138 42.8
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 5.2e-18 95.1 104 55.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 7.6e-17 91.3 152 42.1
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 9.9e-17 90.9 125 46.4
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.1e-15 87.4 152 35.5
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.6e-14 83.6 146 38.4
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 8.7e-13 77.8 118 48.3
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 4.3e-12 75.5 104 46.2
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 7.3e-12 74.7 113 38.9
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.2e-11 73.9 146 36.3
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.8e-10 70.1 164 35.4
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 9.0e-10 67.8 97 50.5
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.5e-09 67.0 48 62.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 2.6e-09 66.2 183 32.8
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.4e-08 61.6 131 36.6
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 1.6e-06 57.0 98 41.8


User provided reference genes

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