Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 7.7e-118 427.2 216 100.0
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 7.7e-110 400.6 216 94.4
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.2e-107 393.3 216 93.1
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 6.1e-83 311.2 215 74.9
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.0e-82 310.5 215 75.8
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.8e-82 309.7 212 75.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.6e-73 279.3 217 71.4
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.6e-73 279.3 219 69.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.4e-72 274.6 217 71.9
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 8.6e-61 237.7 220 58.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.2e-59 233.8 220 57.7
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 8.9e-58 227.6 220 56.4
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.4e-57 225.7 215 57.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.6e-53 211.1 224 55.8
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.5e-52 209.5 216 54.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.5e-52 209.5 213 52.6
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 8.9e-50 201.1 217 53.0
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.3e-48 197.2 212 50.9
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.4e-47 193.7 220 51.8
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 5.4e-47 191.8 219 50.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 9.2e-47 191.0 219 49.8
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 7.8e-46 188.0 217 52.1
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 7.8e-46 188.0 216 51.9
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.7e-45 186.8 216 50.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.5e-44 183.7 218 49.5
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.3e-44 182.2 216 48.6
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 4.3e-44 182.2 216 51.4
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 5.6e-44 181.8 228 50.4
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 8.1e-43 177.9 219 48.4
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.1e-42 177.6 215 49.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-42 177.2 216 47.2
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.4e-42 177.2 218 48.2
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 2.4e-42 176.4 215 47.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 2.4e-42 176.4 219 51.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.4e-42 176.4 217 51.2
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.0e-42 175.6 221 51.1
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.2e-42 175.3 220 50.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 5.2e-42 175.3 221 48.9
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 8.9e-42 174.5 226 49.1
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.0e-41 173.3 218 49.1
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 4.4e-41 172.2 223 47.5
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 5.8e-41 171.8 214 49.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.3e-40 170.6 220 47.3
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.9e-40 169.5 216 45.8
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 2.9e-40 169.5 221 48.0
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.9e-40 169.5 218 48.2
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 6.4e-40 168.3 226 46.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 8.4e-40 167.9 222 49.1
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.9e-39 166.8 213 47.4
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.4e-39 166.4 220 47.7
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.4e-39 166.4 226 47.8
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 4.2e-39 165.6 217 47.5
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.4e-39 165.2 220 47.7
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.3e-39 164.5 218 50.5
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.3e-39 164.5 218 50.5
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.6e-38 163.7 214 45.8
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-38 163.7 217 46.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.7e-38 162.9 217 46.1
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 2.7e-38 162.9 230 43.9
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 6.0e-38 161.8 226 46.0
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 6.0e-38 161.8 217 47.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.8e-38 161.4 186 48.9
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.3e-37 160.6 217 47.5
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.0e-37 159.5 214 48.1
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 6.6e-37 158.3 219 44.7
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 8.7e-37 157.9 213 44.6
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 8.7e-37 157.9 201 47.8
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-36 157.5 219 46.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.5e-36 157.1 219 46.6
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.9e-36 156.8 253 40.7
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.5e-36 156.4 207 46.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 4.3e-36 155.6 223 46.2
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.6e-36 155.2 215 46.0
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-35 153.7 214 47.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.1e-35 153.3 218 44.5
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.4e-34 150.6 228 45.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.4e-34 150.6 226 42.9
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.8e-34 150.2 220 43.6
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.4e-34 149.8 218 47.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 3.1e-34 149.4 217 45.2
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 9.0e-34 147.9 217 43.3
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.2e-33 147.5 225 44.0
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.6e-33 146.4 216 43.5
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 5.8e-33 145.2 213 45.1
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 5.8e-33 145.2 223 44.4
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 9.9e-33 144.4 219 45.7
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-32 144.1 215 43.3
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.7e-32 143.7 216 42.6
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.8e-32 142.5 214 43.5
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.4e-32 141.7 221 41.2
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 8.4e-32 141.4 216 42.6
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.4e-31 140.6 223 43.5
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.4e-31 140.6 217 41.0
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.4e-31 138.7 216 41.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.2e-30 137.5 216 44.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.2e-30 137.5 222 43.2
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-30 135.6 218 41.3
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.6e-30 135.6 218 41.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 7.9e-30 134.8 178 48.9
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.3e-29 134.0 226 41.6
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 1.8e-29 133.7 221 41.2
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 5.1e-29 132.1 216 42.6
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 5.1e-29 132.1 219 43.8
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.1e-29 132.1 220 41.4
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 6.7e-29 131.7 217 41.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.1e-28 131.0 216 41.7
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.9e-28 130.2 219 41.6
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-28 130.2 215 41.9
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 2.5e-28 129.8 216 43.1
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 4.3e-28 129.0 219 42.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 5.6e-28 128.6 190 40.5
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 5.6e-28 128.6 241 37.3
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 5.6e-28 128.6 216 41.2
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 9.6e-28 127.9 222 43.2
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.6e-27 125.9 224 38.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 8.1e-27 124.8 227 41.0
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 8.1e-27 124.8 218 39.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.4e-26 124.0 216 42.1
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.4e-26 124.0 178 46.6
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.8e-26 123.6 220 41.4
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.1e-26 122.9 211 40.8
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 6.9e-26 121.7 217 41.0
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.0e-25 120.2 217 41.5
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.3e-24 117.5 220 39.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.3e-24 117.5 193 40.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.9e-23 113.6 189 39.7
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.9e-23 113.6 237 38.4
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 2.4e-23 113.2 222 40.1
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 9.3e-23 111.3 206 37.9
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.6e-22 110.5 218 39.4
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 2.1e-22 110.2 218 38.1
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 2.7e-22 109.8 178 40.4
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 2.7e-22 109.8 187 40.1
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 7.9e-22 108.2 187 42.2
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.0e-21 107.8 87 60.9
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.8e-21 107.1 187 42.2
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.8e-21 107.1 187 42.2
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 3.0e-21 106.3 215 39.1
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 5.1e-21 105.5 187 41.2
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 8.7e-21 104.8 216 36.6
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 4.3e-20 102.4 229 35.4
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.6e-19 100.5 158 41.8
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.4e-18 97.4 217 33.2
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 6.9e-18 95.1 213 38.5
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.6e-17 93.2 213 37.1
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.6e-17 93.2 217 35.0
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.4e-15 87.4 112 49.1
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 7.1e-15 85.1 140 39.3
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.1e-14 83.6 142 38.7
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 7.9e-14 81.6 185 34.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.3e-13 80.9 85 54.1
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.3e-13 80.9 221 32.6
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 5.1e-13 79.0 220 32.7
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.8e-11 73.2 135 39.3
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 6.3e-11 72.0 99 46.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 4.1e-10 69.3 155 36.8
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.2e-09 67.8 94 46.8
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.5e-09 67.4 57 61.4
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.5e-09 67.4 57 61.4
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 2.6e-09 66.6 82 50.0
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 2.6e-09 66.6 80 47.5
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 3.2e-07 59.7 45 60.0
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.6e-06 57.4 91 45.1
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 4.6e-06 55.8 54 55.6
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 4.6e-06 55.8 86 43.0
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 4.6e-06 55.8 60 50.0


User provided reference genes

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