Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G154.2 Capsicum annuum HOM05D004974 ORTHO05D001537 3.9e-45 184.5 97 100.0
Nitab4.5_0000045g0090 Nicotiana tabacum HOM05D004974 ORTHO05D001537 2.2e-40 168.7 96 92.7
Solyc09g061320.4 Solanum lycopersicum HOM05D004974 ORTHO05D001537 3.8e-40 167.9 97 91.8
Sopen09g024080 Solanum pennellii HOM05D004974 ORTHO05D001537 3.8e-40 167.9 97 91.8
PGSC0003DMG400017652 Solanum tuberosum HOM05D004974 ORTHO05D001537 8.4e-40 166.8 97 91.8
Nitab4.5_0006192g0010 Nicotiana tabacum HOM05D004974 ORTHO05D001537 1.2e-38 162.9 95 91.6
CAN.G900.32 Capsicum annuum HOM05D004974 ORTHO05D001537 1.6e-38 162.5 97 90.7
Peaxi162Scf00107g00164 Petunia axillaris HOM05D004974 ORTHO05D001537 6.0e-38 160.6 97 85.6
Manes.13G045300 Manihot esculenta HOM05D004974 ORTHO05D001537 8.7e-29 130.2 95 71.6
Cc01_g17120 Coffea canephora HOM05D004974 ORTHO05D001537 5.6e-28 127.5 97 69.1
GSVIVG01028650001 Vitis vinifera HOM05D004974 ORTHO05D001537 2.1e-27 125.6 92 72.8
Oeu022257.1 Olea europaea HOM05D004974 ORTHO05D001537 1.4e-26 122.9 94 69.1
Thecc.01G226800 Theobroma cacao HOM05D004974 ORTHO05D001537 1.4e-26 122.9 93 65.6
vmacro02753 Vaccinium macrocarpon HOM05D004974 ORTHO05D001537 1.8e-26 122.5 89 70.8
ECA232G3165 Erigeron canadensis HOM05D004974 ORTHO05D001537 3.1e-26 121.7 89 69.7
PGR044G1568 Punica granatum HOM05D004974 ORTHO05D001537 5.3e-26 120.9 95 68.4
Dinv19208 Davidia involucrata HOM05D004974 ORTHO05D000168 9.0e-26 120.2 89 69.7
Lj2C1132G7 Lonicera japonica HOM05D004974 ORTHO05D000168 9.0e-26 120.2 96 67.7
AUR62031806 Chenopodium quinoa HOM05D004974 ORTHO05D001537 1.2e-25 119.8 83 74.7
Duzib133G1519 Durio zibethinus HOM05D004974 ORTHO05D001537 1.2e-25 119.8 94 66.0
Actinidia30081 Actinidia chinensis HOM05D004974 ORTHO05D001537 3.4e-25 118.2 89 67.4
AUR62008904 Chenopodium quinoa HOM05D004974 ORTHO05D001537 3.4e-25 118.2 83 73.5
HanXRQChr16g0532351 Helianthus annuus HOM05D004974 ORTHO05D001537 3.4e-25 118.2 81 72.8
Phvul.008G125000 Phaseolus vulgaris HOM05D004974 ORTHO05D001537 4.5e-25 117.9 91 70.3
QL09p054672 Quercus lobata HOM05D004974 ORTHO05D001537 5.8e-25 117.5 95 67.4
TAR365G0028 Trochodendron aralioides HOM05D004974 ORTHO05D001537 7.6e-25 117.1 91 68.1
Lalb_Chr01g0022381 Lupinus albus HOM05D004974 ORTHO05D001537 9.9e-25 116.7 96 63.5
Gorai.007G153800 Gossypium raimondii HOM05D004974 ORTHO05D001537 1.7e-24 115.9 92 66.3
Ciclev10020126m.g Citrus clementina HOM05D004974 ORTHO05D001537 2.2e-24 115.5 94 62.8
Psat3g144880 Pisum sativum HOM05D004974 ORTHO05D001537 2.2e-24 115.5 96 61.5
Atru.chr5.2001 Acer truncatum HOM05D004974 ORTHO05D001537 2.9e-24 115.2 91 67.0
Eucgr.K02174 Eucalyptus grandis HOM05D004974 ORTHO05D001537 2.9e-24 115.2 90 65.6
Eucgr.K02179 Eucalyptus grandis HOM05D004974 ORTHO05D001537 2.9e-24 115.2 90 65.6
Gohir.A11G137200 Gossypium hirsutum HOM05D004974 ORTHO05D001537 2.9e-24 115.2 92 65.2
ClCG07G001900 Citrullus lanatus HOM05D004974 ORTHO05D001537 3.8e-24 114.8 92 63.0
PSO063G7040 Papaver somniferum HOM05D004974 ORTHO05D001537 3.8e-24 114.8 89 68.5
Gohir.D11G143600 Gossypium hirsutum HOM05D004974 ORTHO05D001537 4.9e-24 114.4 92 65.2
Potri.014G189500 Populus trichocarpa HOM05D004974 ORTHO05D001537 4.9e-24 114.4 94 63.8
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 8.4e-24 113.6 85 70.6
Ca_07523_v3 Cicer arietinum L. HOM05D004974 ORTHO05D001537 8.4e-24 113.6 96 62.5
Rhsim13G0044600 Rhododendron simsii HOM05D004974 ORTHO05D001537 8.4e-24 113.6 87 69.0
Sabra14G0144900 Salix brachista HOM05D004974 ORTHO05D001537 8.4e-24 113.6 94 63.8
MELO3C026996.2 Cucumis melo HOM05D004974 ORTHO05D001537 1.1e-23 113.2 92 63.0
PSO017G1462 Papaver somniferum HOM05D004974 ORTHO05D001537 1.1e-23 113.2 82 72.0
TPR.G9031 Trifolium pratense HOM05D004974 ORTHO05D001537 1.1e-23 113.2 97 60.8
VMungo1383G2852 Vigna mungo HOM05D004974 ORTHO05D001537 1.1e-23 113.2 96 60.4
CsaV3_3G029890 Cucumis sativus L. HOM05D004974 ORTHO05D001537 1.9e-23 112.5 92 63.0
TWI36G0218 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 1.9e-23 112.5 94 64.9
arahy.Tifrunner.gnm1.ann1.7S1X7X Arachis hypogaea HOM05D004974 ORTHO05D001537 2.4e-23 112.1 82 73.2
arahy.Tifrunner.gnm1.ann1.GEM3QE Arachis hypogaea HOM05D004974 ORTHO05D001537 2.4e-23 112.1 82 73.2
COL.COLO4_08178 Corchorus olitorius HOM05D004974 ORTHO05D001537 2.4e-23 112.1 94 61.7
Haze_24788 Corylus avellana HOM05D004974 ORTHO05D001537 2.4e-23 112.1 95 64.2
Glyma.08G354800 Glycine max HOM05D004974 ORTHO05D001537 3.2e-23 111.7 91 63.7
Sed0026000 Sechium edule HOM05D004974 ORTHO05D001537 5.5e-23 110.9 100 61.0
Lj1g0028171 Lotus japonicus HOM05D004974 ORTHO05D001537 7.1e-23 110.5 85 64.7
MD05G1176600 Malus domestica HOM05D004974 ORTHO05D001537 7.1e-23 110.5 90 64.4
Rhsim01G0256000 Rhododendron simsii HOM05D004974 ORTHO05D001537 7.1e-23 110.5 82 69.5
SGA_v2.0_scaffold1G00729 Striga asiatica HOM05D004974 ORTHO05D001537 7.1e-23 110.5 93 66.7
THA.LOC104802676 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 7.1e-23 110.5 82 69.5
CSS0012166 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 9.3e-23 110.2 81 72.8
Aqoxy2G03888 Aquilegia oxysepala HOM05D004974 ORTHO05D001537 1.2e-22 109.8 95 61.1
Lalb_Chr03g0041801 Lupinus albus HOM05D004974 ORTHO05D001537 1.2e-22 109.8 95 58.9
Oeu004060.1 Olea europaea HOM05D004974 ORTHO05D001537 1.2e-22 109.8 70 80.0
Sc17g0002410 Simmondsia chinensis HOM05D004974 ORTHO05D001537 1.2e-22 109.8 95 62.1
CSS0031489 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 1.6e-22 109.4 81 71.6
Medtr7g058520 Medicago truncatula HOM05D004974 ORTHO05D001537 1.6e-22 109.4 97 57.7
Nn4g24998 Nelumbo nucifera HOM05D004974 ORTHO05D001537 1.6e-22 109.4 90 62.2
Thhalv10020757m.g Eutrema salsugineum HOM05D004974 ORTHO05D001537 2.1e-22 109.0 81 71.6
THA.LOC104818948 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 2.1e-22 109.0 95 62.1
AL3G18310 Arabidopsis lyrata HOM05D004974 ORTHO05D001537 2.7e-22 108.6 81 71.6
AT3G07080 Arabidopsis thaliana HOM05D004974 ORTHO05D001537 2.7e-22 108.6 81 71.6
Cpa.g.sc8.163 Carica papaya HOM05D004974 ORTHO05D001537 2.7e-22 108.6 92 65.2
MD10G1165300 Malus domestica HOM05D004974 ORTHO05D001537 2.7e-22 108.6 88 64.8
Carub.0003s0659 Capsella rubella HOM05D004974 ORTHO05D001537 3.5e-22 108.2 81 71.6
Lj5g0019880 Lotus japonicus HOM05D004974 ORTHO05D001537 3.5e-22 108.2 98 61.2
Sp3g06020 Schrenkiella parvula HOM05D004974 ORTHO05D001537 3.5e-22 108.2 81 71.6
BcaC09g47938 Brassica carinata HOM05D004974 ORTHO05D001537 4.6e-22 107.8 87 69.0
BolC1t05570H Brassica oleracea HOM05D004974 ORTHO05D001537 4.6e-22 107.8 87 69.0
CARHR081670 Cardamine hirsuta HOM05D004974 ORTHO05D001537 4.6e-22 107.8 81 71.6
EL10Ac3g05326 Beta vulgaris HOM05D004974 ORTHO05D001537 6.0e-22 107.5 91 64.8
BraA01t04399Z Brassica rapa HOM05D004974 ORTHO05D001537 6.0e-22 107.5 87 69.0
Lj1A85T20 Lonicera japonica HOM05D004974 ORTHO05D001537 6.0e-22 107.5 81 69.1
Prupe.8G203700 Prunus persica HOM05D004974 ORTHO05D001537 6.0e-22 107.5 94 61.7
Actinidia23725 Actinidia chinensis HOM05D004974 ORTHO05D001537 7.9e-22 107.1 85 67.1
Eucgr.G01752 Eucalyptus grandis HOM05D004974 ORTHO05D001537 7.9e-22 107.1 96 60.4
Hund18374 Selenicereus undatus HOM05D004974 ORTHO05D001537 1.3e-21 106.3 82 67.1
TWI18G1322 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 1.3e-21 106.3 80 71.2
A03p35060 Brassica napus HOM05D004974 ORTHO05D001537 1.8e-21 105.9 81 70.4
C03p42640 Brassica napus HOM05D004974 ORTHO05D001537 1.8e-21 105.9 81 70.4
BolC3t16534H Brassica oleracea HOM05D004974 ORTHO05D001537 1.8e-21 105.9 81 70.4
BraA03t12686Z Brassica rapa HOM05D004974 ORTHO05D001537 1.8e-21 105.9 81 70.4
RcHm_v2.0_Chr6g0284971 Rosa chinensis HOM05D004974 ORTHO05D001537 2.3e-21 105.5 82 68.3
EL10Ac7g17825 Beta vulgaris HOM05D004974 ORTHO05D001537 3.0e-21 105.1 94 56.4
FvH4_2g19180 Fragaria vesca HOM05D004974 ORTHO05D001537 3.0e-21 105.1 82 68.3
FAN24G0854 Fragaria x ananassa HOM05D004974 ORTHO05D001537 3.0e-21 105.1 82 68.3
Sed0019567 Sechium edule HOM05D004974 ORTHO05D001537 3.9e-21 104.8 95 60.0
Hund05533 Selenicereus undatus HOM05D004974 ORTHO05D001537 3.9e-21 104.8 81 69.1
Hund05537 Selenicereus undatus HOM05D004974 ORTHO05D001537 3.9e-21 104.8 81 69.1
Nn1g07839 Nelumbo nucifera HOM05D004974 ORTHO05D001537 5.1e-21 104.4 85 61.2
Zm00001eb273630 Zea mays HOM05D004974 ORTHO05D001537 5.1e-21 104.4 91 63.7
FAN15G2952 Fragaria x ananassa HOM05D004974 ORTHO05D001537 6.7e-21 104.0 82 67.1
Aa31LG5G17640 Aethionema arabicum HOM05D004974 ORTHO05D001537 8.7e-21 103.6 81 69.1
BolC7t41758H Brassica oleracea HOM05D004974 ORTHO05D001537 8.7e-21 103.6 81 67.9
MSTRG.18386 Avicennia marina HOM05D004974 ORTHO05D001537 1.1e-20 103.2 91 61.5
C07p01960 Brassica napus HOM05D004974 ORTHO05D001537 1.9e-20 102.4 81 67.9
SalBow1G3148 Salvia bowleyana HOM05D004974 ORTHO05D001537 1.9e-20 102.4 92 58.7
Os06g0681700 Oryza sativa ssp. japonica HOM05D004974 ORTHO05D001537 2.5e-20 102.1 66 80.3
MSTRG.21423 Avicennia marina HOM05D004974 ORTHO05D001537 3.3e-20 101.7 82 68.3
ATR0736G069 Amborella trichopoda HOM05D004974 ORTHO05D001537 5.6e-20 100.9 89 64.0
Zm00001eb225240 Zea mays HOM05D004974 ORTHO05D001537 7.4e-20 100.5 66 78.8
C07p12710 Brassica napus HOM05D004974 ORTHO05D001537 9.6e-20 100.1 81 67.9
CDE02G3969 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 2.1e-19 99.0 69 73.9
CDE08G1692 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 2.1e-19 99.0 69 73.9
BcaC05g29837 Brassica carinata HOM05D004974 ORTHO05D001537 4.8e-19 97.8 82 67.1
C05p60300 Brassica napus HOM05D004974 ORTHO05D001537 4.8e-19 97.8 82 67.1
Migut.D00531 Erythranthe guttata HOM05D004974 ORTHO05D001537 6.2e-19 97.4 94 56.4
MBI16_g31263_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.4e-18 96.3 76 64.5
unitig_749.g13727 Utricularia gibba HOM05D004974 ORTHO05D001537 1.4e-18 96.3 79 65.8
HPP92_000858 Vanilla planifolia HOM05D004974 ORTHO05D001537 2.4e-18 95.5 82 64.6
BolC5t34678H Brassica oleracea HOM05D004974 ORTHO05D001537 3.1e-18 95.1 66 74.2
MBI10_g06044_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.2e-17 93.2 70 64.3
VMungo0720G1354 Vigna mungo HOM05D004974 ORTHO05D001537 2.0e-17 92.4 69 68.1
HPP92_026551 Vanilla planifolia HOM05D004974 ORTHO05D001537 3.4e-17 91.7 93 55.9
BcaC06g36634 Brassica carinata HOM05D004974 ORTHO05D001537 1.7e-16 89.4 81 64.2
BolC7t40605H Brassica oleracea HOM05D004974 ORTHO05D001537 1.7e-16 89.4 81 64.2
HPP92_002198 Vanilla planifolia HOM05D004974 ORTHO05D001537 1.7e-16 89.4 93 55.9
SEGI_31222 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 2.2e-16 89.0 75 62.7
BcaC05g29757 Brassica carinata HOM05D004974 ORTHO05D001537 2.9e-16 88.6 81 61.7
SMO167G0060 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 3.8e-16 88.2 77 59.7
SMO347G0321 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 3.8e-16 88.2 77 59.7
PSO170G3054 Papaver somniferum HOM05D004974 ORTHO05D001537 7.1e-15 84.0 65 66.2
PSO407G0193 Papaver somniferum HOM05D004974 ORTHO05D001537 1.2e-14 83.2 65 64.6
Pp3c2_11660 Physcomitrium patens HOM05D004974 ORTHO05D001537 1.2e-14 83.2 80 56.2
BcaB04g21310 Brassica carinata HOM05D004974 ORTHO05D001537 2.1e-14 82.4 61 70.5
VMungo0540G2436 Vigna mungo HOM05D004974 ORTHO05D001537 6.0e-14 80.9 66 63.6
Mapoly0028s0131 Marchantia polymorpha HOM05D004974 ORTHO05D001537 9.7e-12 73.6 64 59.4
MD04G1105300 Malus domestica HOM05D004974 ORTHO05D001537 2.2e-11 72.4 45 82.2
MBI10_g47169_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 6.3e-11 70.9 66 54.5
MCO05G003 Micromonas commoda HOM05D004974 ORTHO05D001537 1.6e-06 56.2 60 50.0


User provided reference genes

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