Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 8.8e-119 430.3 209 100.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.3e-100 367.9 185 96.8
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.1e-96 354.4 185 92.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.3e-94 348.6 185 90.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.1e-92 342.0 185 88.6
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.9e-90 335.5 185 86.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.5e-89 332.4 185 85.4
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.8e-87 326.2 185 84.9
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.0e-84 314.3 188 82.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 7.7e-83 310.8 185 81.6
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.4e-70 268.9 185 67.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-69 266.5 151 84.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.5e-67 258.8 185 65.4
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.7e-66 256.5 185 65.4
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 5.0e-66 255.0 186 65.1
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 6.6e-66 254.6 185 65.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.1e-65 253.8 185 64.9
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.3e-65 252.3 189 63.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 7.3e-65 251.1 188 64.9
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.1e-64 249.6 185 65.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 3.6e-64 248.8 185 63.8
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 6.2e-64 248.1 184 64.7
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.2e-62 243.8 187 61.5
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.2e-62 243.8 185 62.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.0e-62 243.0 185 61.1
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.4e-62 242.3 185 63.2
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 5.8e-62 241.5 186 62.9
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 5.8e-62 241.5 186 61.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.5e-62 241.1 199 58.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.3e-61 240.4 185 61.6
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.7e-61 238.8 186 61.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 6.4e-61 238.0 185 60.5
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.3e-61 237.7 185 58.9
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 8.3e-61 237.7 185 60.0
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.1e-60 237.3 225 52.9
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.1e-60 237.3 186 61.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 2.4e-60 236.1 188 63.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.4e-60 236.1 186 60.2
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.4e-60 236.1 185 61.1
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 4.1e-60 235.3 224 55.4
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 7.0e-60 234.6 184 62.0
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 7.0e-60 234.6 188 61.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.6e-59 233.4 187 56.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.1e-59 233.0 187 58.3
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.7e-59 232.6 185 62.2
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.6e-59 231.9 183 59.0
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 6.0e-59 231.5 206 56.3
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 7.8e-59 231.1 187 56.7
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.3e-58 230.3 186 57.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.3e-58 230.3 191 59.7
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-58 230.3 188 56.9
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-58 230.3 188 56.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.7e-58 229.9 209 53.1
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.7e-58 229.9 196 58.7
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.3e-58 229.6 186 60.8
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.0e-58 229.2 188 56.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.0e-58 229.2 188 56.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.0e-58 229.2 188 56.9
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.0e-58 229.2 185 60.0
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.0e-58 229.2 130 85.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 5.1e-58 228.4 185 58.9
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 6.6e-58 228.0 192 56.8
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.6e-58 228.0 185 59.5
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.3e-57 225.7 177 59.3
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 5.6e-57 224.9 188 56.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 7.3e-57 224.6 207 53.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 9.5e-57 224.2 187 55.1
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 9.5e-57 224.2 185 57.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-56 223.8 186 56.5
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.2e-56 223.8 183 56.8
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.2e-56 223.8 185 57.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.1e-56 223.0 187 58.3
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.8e-56 222.6 188 55.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.8e-56 222.6 185 57.3
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 3.6e-56 222.2 149 67.8
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.6e-56 222.2 185 58.4
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.8e-55 219.9 183 57.4
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.3e-55 219.5 186 54.8
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.3e-55 219.5 185 55.1
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.3e-55 219.5 186 55.9
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.0e-55 218.8 186 55.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.0e-55 218.8 186 55.9
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.2e-55 218.4 253 47.4
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 8.9e-55 217.6 187 52.9
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.2e-54 217.2 200 54.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 7.5e-54 214.5 228 48.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 9.9e-54 214.2 187 54.5
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.3e-53 213.8 183 56.3
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-53 213.8 180 54.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.3e-53 213.8 146 65.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.9e-53 212.6 184 53.8
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.2e-52 209.1 108 90.7
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-50 203.4 135 64.4
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-50 203.4 135 64.4
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 6.6e-50 201.4 186 52.2
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.5e-49 200.3 176 56.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.6e-48 196.8 173 57.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-48 196.8 154 60.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.1e-48 196.4 187 51.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.0e-46 189.9 128 65.6
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 5.8e-46 188.3 187 51.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.2e-45 186.4 144 57.6
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 3.8e-45 185.7 188 48.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.4e-45 184.5 149 61.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.1e-44 184.1 166 57.2
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.1e-44 184.1 189 48.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.4e-44 183.0 130 62.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 2.4e-44 183.0 186 48.9
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 5.4e-44 181.8 186 49.5
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-43 180.6 128 65.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 5.1e-42 175.3 147 54.4
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.1e-39 167.5 230 42.2
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 9.0e-39 164.5 147 51.0
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-38 164.1 147 55.1
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-38 164.1 151 51.0
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 3.2e-36 156.0 126 57.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.0e-35 151.8 105 61.0
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.1e-33 147.5 143 52.4
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.5e-33 147.1 153 52.9
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.5e-33 147.1 193 43.5
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-32 144.1 102 64.7
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-32 144.1 115 59.1
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.8e-32 142.9 86 75.6
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.8e-31 140.2 86 74.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-31 139.8 86 74.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-31 139.8 86 73.3
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 5.3e-31 138.7 173 42.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.2e-27 127.5 115 48.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-27 127.1 147 43.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 5.1e-26 122.1 176 35.8
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.8e-24 115.5 125 48.0
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 6.9e-23 111.7 147 38.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.2e-22 110.9 202 33.2
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.9e-21 106.3 67 65.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.8e-21 105.9 67 68.7
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-20 104.0 83 60.2
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 4.2e-20 102.4 90 57.8
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.5e-20 102.1 67 64.2
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-19 100.9 81 59.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.5e-19 99.4 69 58.0
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 3.0e-18 96.3 145 35.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.3e-16 90.9 70 52.9
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 3.7e-16 89.4 82 54.9
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 3.1e-15 86.3 70 51.4
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 7.6e-14 81.6 63 57.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.6e-11 73.9 59 57.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.3e-10 70.9 50 66.0
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.7e-10 68.2 58 51.7
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 3.3e-09 66.2 83 44.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.8e-08 63.2 38 84.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.1e-07 61.2 42 54.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.4e-07 60.1 48 58.3
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.1e-07 59.7 59 49.2
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.5e-06 57.4 35 71.4


User provided reference genes

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