Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 2.3e-257 891.7 451 100.0
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 2.6e-229 798.5 457 90.2
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 1.9e-227 792.3 458 89.1
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 4.2e-227 791.2 458 89.1
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 4.1e-222 774.6 457 86.9
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 2.6e-208 728.8 457 83.4
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 8.9e-201 703.7 459 80.0
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.9e-188 661.8 465 74.4
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 5.0e-188 661.4 464 73.9
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.1e-187 660.2 457 75.7
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.2e-186 656.8 457 75.5
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 6.2e-186 654.4 457 74.0
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 5.2e-185 651.4 452 74.1
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 8.9e-185 650.6 457 74.6
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.2e-184 650.2 458 74.2
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 3.4e-184 648.7 460 72.8
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 5.8e-184 647.9 415 78.8
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 9.8e-184 647.1 459 72.8
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.7e-183 646.4 458 74.0
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 3.7e-183 645.2 469 71.6
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 4.9e-183 644.8 396 80.1
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 8.3e-183 644.0 465 74.0
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.2e-182 642.1 459 73.9
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 4.1e-182 641.7 464 72.4
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.0e-180 637.1 467 71.3
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 1.0e-180 637.1 461 72.7
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.3e-180 636.7 469 72.5
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.3e-180 636.7 460 71.3
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 1.7e-180 636.3 451 73.2
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 3.0e-180 635.6 457 71.3
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 3.0e-180 635.6 459 73.9
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.9e-180 635.2 466 71.5
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 5.0e-180 634.8 462 71.9
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 6.6e-180 634.4 464 71.6
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.1e-179 633.6 376 83.0
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 1.1e-179 633.6 461 71.1
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 5.6e-179 631.3 461 70.9
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 7.3e-179 630.9 463 71.3
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 1.2e-178 630.2 406 76.6
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.6e-178 629.8 463 70.4
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.1e-178 629.4 464 70.0
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.1e-177 627.1 461 70.5
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.1e-177 627.1 411 75.9
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.8e-177 626.3 446 72.2
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 6.8e-177 624.4 466 70.2
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 8.9e-177 624.0 373 81.2
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.2e-176 623.6 454 72.7
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 3.4e-176 622.1 468 69.4
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 1.3e-175 620.2 476 67.9
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.7e-175 619.8 404 76.7
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 3.7e-175 618.6 444 72.5
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 3.7e-175 618.6 459 71.5
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 8.3e-175 617.5 458 70.1
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.1e-174 617.1 458 71.0
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 3.2e-174 615.5 458 70.7
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 9.2e-174 614.0 451 69.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 9.2e-174 614.0 374 81.0
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 1.6e-173 613.2 491 66.8
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 2.7e-173 612.5 467 68.7
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 4.6e-173 611.7 441 72.3
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 4.6e-173 611.7 442 71.5
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 7.8e-173 610.9 373 78.6
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 6.6e-172 607.8 439 70.6
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 9.5e-171 604.0 451 69.0
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.2e-170 603.6 449 70.8
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.8e-170 602.4 451 68.7
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 3.6e-170 602.1 459 68.2
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.4e-169 600.1 373 78.0
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.8e-169 599.7 453 68.9
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 3.1e-169 599.0 459 68.2
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 8.9e-169 597.4 390 75.6
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.3e-167 593.6 451 68.1
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.4e-166 588.2 455 67.5
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 7.1e-166 587.8 456 67.3
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 2.1e-165 586.3 451 66.7
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 6.0e-165 584.7 390 74.1
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 1.3e-164 583.6 386 74.1
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 3.0e-164 582.4 466 65.5
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 6.6e-164 581.3 412 70.6
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 2.5e-163 579.3 407 70.8
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 4.3e-163 578.6 452 66.6
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.2e-162 577.0 433 68.1
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.1e-162 576.2 405 69.6
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.1e-162 576.2 379 75.2
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 1.8e-161 573.2 441 65.8
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 2.4e-161 572.8 451 66.1
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 4.0e-161 572.0 448 65.0
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 3.4e-160 568.9 443 65.5
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 9.9e-160 567.4 417 67.4
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.1e-158 563.9 464 65.7
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 1.1e-155 553.9 460 65.4
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 2.8e-154 549.3 417 66.2
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.6e-154 548.9 417 66.2
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.6e-154 548.9 417 66.2
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 4.8e-154 548.5 417 65.9
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 4.8e-154 548.5 417 65.9
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 6.4e-151 538.1 462 61.7
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 3.7e-146 522.3 452 61.3
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 4.8e-146 521.9 387 66.4
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 8.1e-146 521.2 460 59.8
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.7e-143 513.5 308 80.8
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.7e-143 513.5 338 76.3
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 8.4e-135 484.6 384 66.4
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 3.5e-112 409.5 281 74.0
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.7e-111 407.1 362 58.0
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 3.6e-109 399.4 371 53.6
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 9.7e-107 391.3 373 53.1
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.4e-105 387.5 358 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 2.0e-104 383.6 384 50.5
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.1e-97 359.8 369 50.1
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 2.2e-95 353.6 370 51.6
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.3e-82 311.2 317 50.5
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 4.5e-80 302.8 337 49.0
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.7e-79 300.8 381 46.2
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 3.7e-58 229.9 136 77.2
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.2e-48 198.4 249 48.2
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 7.1e-41 172.6 95 83.2
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.5e-38 164.9 104 75.0
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.1e-30 138.7 83 84.3
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.3e-30 137.1 319 32.6
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 5.6e-30 136.3 83 83.1
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 8.1e-29 132.5 82 80.5
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.1e-28 130.6 260 34.2
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.7e-26 124.8 89 73.0
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.6e-24 118.2 73 78.1
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.3e-23 115.2 135 56.3
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 1.1e-22 112.1 368 26.6
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 1.9e-22 111.3 133 51.9
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.8e-18 97.1 126 52.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.5e-14 84.3 73 61.6
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 3.1e-12 77.4 53 69.8
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 2.7e-08 64.3 110 40.0
SEGI_25977 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.5e-06 57.8 88 39.8


User provided reference genes

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