Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 1.1e-84 316.6 168 100.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 4.0e-82 308.1 167 98.2
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 4.0e-82 308.1 167 98.2
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.8e-80 301.6 167 87.4
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-78 296.2 164 94.5
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-78 296.2 164 94.5
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-78 296.2 164 94.5
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-78 296.2 164 94.5
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-78 296.2 164 94.5
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-78 296.2 164 94.5
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-78 296.2 164 94.5
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.1e-76 290.0 164 93.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.9e-76 289.3 166 92.8
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.9e-76 289.3 166 92.8
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.9e-76 289.3 168 92.3
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 2.5e-76 288.9 164 93.3
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 4.3e-76 288.1 166 92.2
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 9.6e-76 287.0 168 91.7
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-75 286.2 160 94.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 2.1e-75 285.8 164 92.7
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.1e-75 283.9 164 91.5
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.1e-75 283.9 164 91.5
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-74 283.5 161 93.8
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.1e-74 283.5 167 90.4
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-74 282.3 156 95.5
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.4e-74 282.3 158 94.9
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 4.0e-74 281.6 161 91.3
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 4.0e-74 281.6 161 91.3
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 93.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.5e-73 279.6 158 93.0
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 93.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 93.0
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 92.4
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 92.4
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-73 279.6 158 92.4
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 1.5e-73 279.6 167 89.2
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.8e-73 277.7 166 89.2
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.8e-73 277.7 166 89.2
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 93.0
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 93.0
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 7.6e-73 277.3 158 91.8
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 3.8e-72 275.0 166 89.2
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.5e-71 271.2 163 79.8
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 9.3e-71 270.4 160 86.9
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-70 270.0 159 90.6
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 6.0e-70 267.7 164 87.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 6.0e-70 267.7 164 87.2
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 3.0e-69 265.4 158 88.6
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 5.0e-64 248.1 160 83.1
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 8.4e-64 247.3 148 82.4
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 9.3e-63 243.8 164 74.4
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 9.3e-63 243.8 158 76.6
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 7.9e-62 240.7 140 90.7
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.3e-61 240.0 156 84.6
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 6.7e-61 237.7 140 90.0
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 6.7e-61 237.7 140 90.0
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 6.7e-61 237.7 140 90.0
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-60 235.7 163 79.1
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.8e-58 229.6 129 93.8
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 5.3e-58 228.0 133 81.2
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 6.9e-58 227.6 155 74.2
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 7.2e-55 217.6 128 80.5
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 9.4e-55 217.2 164 65.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-53 212.2 102 95.1
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-52 210.3 137 86.1
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.0e-52 209.5 154 76.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 7.4e-52 207.6 102 93.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 7.4e-52 207.6 102 93.1
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 4.8e-51 204.9 130 87.7
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.8e-50 203.0 119 89.9
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.8e-50 203.0 99 93.9
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 2.0e-49 199.5 118 93.2
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-49 199.1 113 96.5
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 1.7e-48 196.4 138 73.9
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.7e-48 196.4 117 93.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.7e-48 196.4 117 93.2
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 5.0e-48 194.9 142 73.2
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-47 192.6 97 90.7
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 2.1e-46 189.5 97 89.7
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 6.1e-46 188.0 94 91.5
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-46 187.6 94 91.5
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 7.9e-46 187.6 94 91.5
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.4e-45 186.8 92 93.5
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 1.4e-45 186.8 92 93.5
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.4e-45 186.8 157 63.7
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.9e-45 185.3 94 90.4
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 5.1e-45 184.9 91 93.4
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 8.8e-45 184.1 95 87.4
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.7e-44 181.4 92 90.2
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.4e-42 176.8 99 81.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.8e-42 176.4 91 86.8
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 3.1e-42 175.6 100 95.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-41 173.3 98 95.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.6e-41 173.3 141 65.2
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.9e-41 171.4 124 68.5
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 2.9e-40 169.1 100 84.0
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.5e-40 167.5 83 90.4
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-39 166.8 95 82.1
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.1e-38 162.9 95 77.9
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 6.1e-38 161.4 92 83.7
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 8.0e-38 161.0 92 78.3
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 8.0e-38 161.0 94 83.0
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.5e-36 156.8 157 52.2
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 4.4e-36 155.2 92 81.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 4.4e-36 155.2 92 81.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 4.4e-36 155.2 92 81.5
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 8.2e-35 151.0 107 69.2
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 1.8e-34 149.8 91 78.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 7.0e-34 147.9 76 92.1
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 4.5e-33 145.2 158 51.9
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 4.5e-33 145.2 85 77.6
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 1.5e-31 140.2 90 76.7
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.2e-31 138.7 72 88.9
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-30 136.0 104 68.3
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.8e-29 131.0 65 90.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.2e-28 130.6 113 65.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-28 130.2 69 87.0
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.3e-27 124.4 65 84.6
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.5e-23 113.6 159 44.7
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 1.5e-23 113.6 75 74.7
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.2e-22 110.5 76 73.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.7e-22 108.6 89 58.4
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 5.2e-21 105.1 54 90.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.8e-21 104.8 72 73.6
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-20 103.6 54 88.9
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 2.0e-20 103.2 53 90.6
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 4.4e-20 102.1 74 68.9
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-19 100.5 53 88.7
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-19 99.4 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 3.7e-19 99.0 81 60.5
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.3e-19 98.2 105 47.6
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 1.0e-16 90.9 64 62.5
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 1.7e-16 90.1 45 91.1
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.9e-16 89.4 48 85.4
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 2.5e-15 86.3 43 93.0
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 9.5e-15 84.3 47 78.7
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-14 83.6 114 43.9
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.7e-14 82.0 42 92.9
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.3e-13 79.7 55 69.1
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 7.5e-12 74.7 40 92.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 1.7e-11 73.6 62 59.7
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-10 70.1 52 65.4
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 4.1e-10 68.9 33 97.0
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 7.0e-10 68.2 47 70.2
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 1.2e-06 57.4 129 36.4
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 2.1e-06 56.6 25 100.0
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 2.8e-06 56.2 37 70.3


User provided reference genes

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