Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.1e-159 566.6 306 100.0
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.9e-94 348.6 307 66.4
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 3.1e-72 276.2 277 65.7
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.5e-47 194.1 324 47.2
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.4e-47 193.0 320 49.1
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 5.9e-47 192.2 321 47.4
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 5.0e-46 189.1 323 46.4
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 8.5e-46 188.3 323 47.4
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 3.6e-44 183.0 371 43.4
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.2e-39 167.9 324 40.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.1e-37 161.4 339 43.7
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 8.8e-35 151.8 336 37.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.6e-34 150.2 333 37.8
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.7e-30 137.5 346 41.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 9.4e-29 131.7 348 41.1
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.4e-29 131.7 345 34.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.4e-29 131.7 324 37.0
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.0e-26 124.0 340 37.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.6e-26 123.6 358 38.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 4.4e-26 122.9 366 35.5
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 2.8e-25 120.2 394 34.8
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.8e-25 120.2 313 36.4
Nitab4.5_0001944g0070 Nicotiana tabacum HOM05D004095 ORTHO05D003197 4.8e-25 119.4 260 41.2
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 1.4e-24 117.9 324 37.0
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.2e-23 114.8 370 36.5
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.6e-23 114.4 344 36.3
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 2.0e-23 114.0 321 37.4
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 3.5e-23 113.2 378 32.8
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.5e-23 112.8 340 33.5
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.0e-22 111.7 385 35.8
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.7e-22 110.9 338 35.2
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.9e-22 110.2 231 35.5
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 5.0e-22 109.4 322 33.9
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.1e-21 108.2 323 32.5
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.1e-21 108.2 377 31.0
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.5e-21 107.8 333 34.8
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 2.5e-21 107.1 322 36.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.2e-21 105.5 323 31.9
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 7.2e-21 105.5 225 34.2
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 7.2e-21 105.5 359 31.8
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 9.4e-21 105.1 352 28.1
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 9.4e-21 105.1 314 34.1
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 2.1e-20 104.0 331 37.8
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.1e-20 104.0 340 34.7
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.7e-20 103.6 330 34.2
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 4.7e-20 102.8 330 35.8
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.0e-19 101.7 327 34.6
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.4e-19 101.3 309 38.2
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.8e-19 100.9 336 38.4
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.8e-19 100.9 391 33.2
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.3e-19 100.5 343 36.4
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.3e-19 100.5 328 32.3
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.0e-19 100.1 326 30.4
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.0e-19 99.8 174 42.0
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 4.0e-19 99.8 328 35.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 5.2e-19 99.4 326 36.5
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 5.2e-19 99.4 323 33.7
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.8e-19 98.6 322 34.8
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 2.0e-18 97.4 312 32.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.0e-18 97.4 332 32.2
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.4e-18 96.7 323 36.2
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 5.7e-18 95.9 176 52.8
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.8e-18 95.1 317 34.1
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.3e-17 94.7 338 35.5
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-17 94.4 335 33.7
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.2e-17 94.0 335 30.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 6.3e-17 92.4 372 30.6
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 6.3e-17 92.4 391 30.7
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.3e-17 92.4 316 28.2
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 6.3e-17 92.4 324 28.4
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 6.3e-17 92.4 224 33.0
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.1e-16 91.7 329 37.4
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.1e-16 90.1 322 32.0
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 3.1e-16 90.1 330 35.2
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 7.0e-16 89.0 384 33.3
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 7.0e-16 89.0 315 36.2
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.0e-16 89.0 321 26.5
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 9.1e-16 88.6 201 43.3
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 9.1e-16 88.6 332 31.3
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 9.1e-16 88.6 318 30.2
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 1.6e-15 87.8 176 46.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.7e-15 87.0 315 29.8
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 3.5e-15 86.7 365 30.4
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 1.3e-14 84.7 162 48.1
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.8e-14 83.2 315 28.9
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.0e-14 82.8 309 29.1
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 5.0e-14 82.8 356 33.4
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 6.6e-14 82.4 320 29.7
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.6e-14 82.4 329 34.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.1e-13 81.6 262 30.2
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 3.3e-13 80.1 230 30.9
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.2e-13 79.7 314 32.2
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.5e-13 79.3 228 33.3
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.8e-12 77.0 345 32.2
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.7e-12 76.3 311 32.2
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 6.1e-12 75.9 329 29.8
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.8e-11 74.3 317 28.4
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 2.3e-11 73.9 339 32.4
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 4.0e-11 73.2 309 31.1
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 4.0e-11 73.2 153 51.6
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 5.2e-11 72.8 309 28.8
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 8.9e-11 72.0 312 29.5
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.9e-11 72.0 218 30.7
Peaxi162Scf00045g02255 Petunia axillaris HOM05D004095 ORTHO05D003197 8.9e-11 72.0 149 35.6
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 8.9e-11 72.0 324 26.5
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.2e-10 71.6 337 30.6
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.2e-10 71.6 337 30.6
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 1.2e-10 71.6 320 26.6
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.0e-10 70.9 354 31.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.6e-10 70.5 322 30.1
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.6e-10 70.5 322 34.2
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 2.6e-10 70.5 84 50.0
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 5.7e-10 69.3 312 25.6
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 5.7e-10 69.3 132 47.0
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 7.5e-10 68.9 89 43.8
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 7.5e-10 68.9 215 27.0
GSVIVG01009951001 Vitis vinifera HOM05D004095 ORTHO05D003197 7.5e-10 68.9 128 53.9
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 9.8e-10 68.6 317 31.2
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 9.8e-10 68.6 172 45.3
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 9.8e-10 68.6 320 31.6
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 9.8e-10 68.6 103 36.9
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.7e-09 67.8 237 29.5
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 8.3e-09 65.5 320 28.1
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 8.3e-09 65.5 394 25.4
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.8e-08 64.3 325 34.2
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.8e-08 64.3 334 25.4
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 2.4e-08 63.9 277 32.9
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.4e-08 63.9 345 28.7
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.2e-08 63.5 320 30.3
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 3.2e-08 63.5 179 39.1
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 4.1e-08 63.2 315 27.0
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 5.4e-08 62.8 231 29.0
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.0e-07 60.8 241 29.9
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.0e-07 60.8 192 30.2
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.7e-07 60.5 314 23.9
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.6e-07 59.7 314 26.8
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 5.9e-07 59.3 178 35.4
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 1.7e-06 57.8 226 37.2
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 2.3e-06 57.4 328 28.7
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 5.0e-06 56.2 323 28.2
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.6e-06 55.8 77 41.6
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 6.6e-06 55.8 312 30.1
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 8.6e-06 55.5 136 37.5


User provided reference genes

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