Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G15.3 Capsicum annuum HOM05D008574 ORTHO05D010611 1.1e-124 449.9 211 100.0
CAN.G410.12 Capsicum annuum HOM05D008574 ORTHO05D010611 9.3e-68 260.8 369 43.6
CAN.G79.92 Capsicum annuum HOM05D008574 ORTHO05D010611 5.1e-50 201.8 115 83.5
CAN.G151.31 Capsicum annuum HOM05D008574 ORTHO05D010611 1.8e-47 193.4 115 77.4
CAN.G100.6 Capsicum annuum HOM05D008574 ORTHO05D010611 3.2e-36 156.0 89 79.8
CAN.G348.6 Capsicum annuum HOM05D005504 ORTHO05D010611 3.9e-34 149.1 88 75.0
CAN.G388.75 Capsicum annuum HOM05D008574 ORTHO05D010611 1.5e-22 110.5 89 62.9
CAN.G9.13 Capsicum annuum HOM05D000725 ORTHO05D003141 5.7e-17 92.0 66 68.2
Atru.chr13.1509 Acer truncatum HOM05D005504 ORTHO05D002688 7.0e-15 85.1 108 39.8
Cpa.g.sc202.15 Carica papaya HOM05D005504 ORTHO05D002688 9.1e-15 84.7 99 38.4
Medtr2g076540 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-14 82.4 93 45.2
Medtr3g027145 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-14 82.4 93 45.2
Medtr7g094380 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-14 82.4 93 45.2
CSS0041263 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 7.7e-14 81.6 117 41.9
Medtr8g060820 Medicago truncatula HOM05D005504 ORTHO05D002688 1.3e-13 80.9 89 46.1
Medtr8g062180 Medicago truncatula HOM05D014266 ORTHO05D018035 1.7e-13 80.5 93 40.9
TPR.G35176 Trifolium pratense HOM05D005504 ORTHO05D002688 2.2e-13 80.1 93 43.0
CSS0028977 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 3.8e-13 79.3 94 46.8
Hma1.2p1_0076F.1_g039500 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.8e-13 79.3 93 43.0
TPR.G22799 Trifolium pratense HOM05D005504 ORTHO05D002688 5.0e-13 79.0 93 43.0
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 6.5e-13 78.6 93 40.9
Hma1.2p1_1109F.1_g257970 Hydrangea macrophylla HOM05D005504 ORTHO05D002688 1.1e-12 77.8 93 41.9
TPR.G468 Trifolium pratense HOM05D000034 ORTHO05D000037 1.1e-12 77.8 93 40.9
CSS0036183 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 1.9e-12 77.0 90 47.8
TPR.G27983 Trifolium pratense HOM05D005504 ORTHO05D002688 1.9e-12 77.0 93 40.9
Atru.chr5.1596 Acer truncatum HOM05D005504 ORTHO05D002688 4.2e-12 75.9 102 39.2
TPR.G3960 Trifolium pratense HOM05D005504 ORTHO05D002688 5.5e-12 75.5 93 40.9
TWI12G0757 Tripterygium wilfordii HOM05D005504 ORTHO05D002688 5.5e-12 75.5 93 36.6
CSS0018718 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 1.2e-11 74.3 90 48.9
CSS0010294 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 1.6e-11 73.9 108 45.4
arahy.Tifrunner.gnm1.ann1.C19S8A Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-11 73.6 93 41.9
arahy.Tifrunner.gnm1.ann1.GG48NL Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-11 73.6 93 41.9
arahy.Tifrunner.gnm1.ann1.0J418G Arachis hypogaea HOM05D000034 ORTHO05D002688 2.7e-11 73.2 93 41.9
arahy.Tifrunner.gnm1.ann1.A110NB Arachis hypogaea HOM05D000034 ORTHO05D002688 6.1e-11 72.0 93 40.9
Manes.05G124000 Manihot esculenta HOM05D005504 ORTHO05D002688 8.0e-11 71.6 106 35.8
Medtr5g086750 Medicago truncatula HOM05D005504 ORTHO05D002688 8.0e-11 71.6 86 43.0
Medtr2g076190 Medicago truncatula HOM05D005504 ORTHO05D002688 1.4e-10 70.9 93 39.8
arahy.Tifrunner.gnm1.ann1.TXJ7KC Arachis hypogaea HOM05D000034 ORTHO05D002688 4.0e-10 69.3 93 41.9
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 6.8e-10 68.6 40 72.5
arahy.Tifrunner.gnm1.ann1.LVB0P9 Arachis hypogaea HOM05D005504 ORTHO05D002688 1.5e-09 67.4 93 40.9
CAN.G234.11 Capsicum annuum HOM05D000198 ORTHO05D003365 2.0e-09 67.0 43 72.1
Peaxi162Scf00002g00292 Petunia axillaris HOM05D008574 ORTHO05D010611 2.0e-09 67.0 63 47.6
arahy.Tifrunner.gnm1.ann1.EQ53E4 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.4e-09 65.9 115 34.8
arahy.Tifrunner.gnm1.ann1.4YXC00 Arachis hypogaea HOM05D005504 ORTHO05D002688 5.7e-09 65.5 93 40.9
arahy.Tifrunner.gnm1.ann1.AHS35P Arachis hypogaea HOM05D000034 ORTHO05D002688 5.7e-09 65.5 112 36.6
arahy.Tifrunner.gnm1.ann1.FZQK49 Arachis hypogaea HOM05D000034 ORTHO05D002688 5.7e-09 65.5 93 40.9
arahy.Tifrunner.gnm1.ann1.R7WLJ8 Arachis hypogaea HOM05D000034 ORTHO05D002688 5.7e-09 65.5 112 35.7
arahy.Tifrunner.gnm1.ann1.V1HUJD Arachis hypogaea HOM05D000034 ORTHO05D002688 5.7e-09 65.5 112 36.6
Lsat_1_v5_gn_5_55200 Lactuca sativa HOM05D005504 ORTHO05D002688 5.7e-09 65.5 93 34.4
Medtr1789s0010 Medicago truncatula HOM05D014266 ORTHO05D002688 5.7e-09 65.5 71 40.8
QL02p014709 Quercus lobata HOM05D005504 ORTHO05D002688 5.7e-09 65.5 101 36.6
Atru.chr1.2748 Acer truncatum HOM05D005504 ORTHO05D002688 7.5e-09 65.1 115 34.8
HanXRQChr12g0355561 Helianthus annuus HOM05D005504 ORTHO05D002688 7.5e-09 65.1 104 33.7
Psat5g178480 Pisum sativum HOM05D005504 ORTHO05D002688 9.8e-09 64.7 85 40.0
HanXRQChr04g0120091 Helianthus annuus HOM05D005504 ORTHO05D002688 1.3e-08 64.3 97 32.0
arahy.Tifrunner.gnm1.ann1.71FTPI Arachis hypogaea HOM05D000034 ORTHO05D002688 1.7e-08 63.9 124 34.7
arahy.Tifrunner.gnm1.ann1.W5JKAZ Arachis hypogaea HOM05D000034 ORTHO05D002688 1.7e-08 63.9 112 35.7
CSS0033166 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 2.2e-08 63.5 90 43.3
ECA232G3538 Erigeron canadensis HOM05D005504 ORTHO05D002688 2.2e-08 63.5 96 33.3
Lsat_1_v5_gn_3_28480 Lactuca sativa HOM05D005504 ORTHO05D002688 2.2e-08 63.5 106 30.2
AUR62008529 Chenopodium quinoa HOM05D005504 ORTHO05D002688 3.7e-08 62.8 100 33.0
arahy.Tifrunner.gnm1.ann1.GJGE9U Arachis hypogaea HOM05D000034 ORTHO05D002688 6.3e-08 62.0 120 32.5
arahy.Tifrunner.gnm1.ann1.W93U0I Arachis hypogaea HOM05D000034 ORTHO05D002688 8.3e-08 61.6 110 32.7
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 8.3e-08 61.6 37 78.4
Peaxi162Scf00008g00018 Petunia axillaris HOM05D008574 ORTHO05D010611 1.1e-07 61.2 54 51.9
EL10Ac7g17364 Beta vulgaris HOM05D005504 ORTHO05D002688 1.8e-07 60.5 93 34.4
Glyma.02G129632 Glycine max HOM05D000034 ORTHO05D002688 1.8e-07 60.5 99 38.4
Glyma.07G272050 Glycine max HOM05D000034 ORTHO05D002688 1.8e-07 60.5 99 38.4
Glyma.10G052850 Glycine max HOM05D000034 ORTHO05D002688 1.8e-07 60.5 99 38.4
Glyma.15G163350 Glycine max HOM05D000034 ORTHO05D002688 1.8e-07 60.5 99 38.4
EL10Ac6g13234 Beta vulgaris HOM05D000034 ORTHO05D002688 5.4e-07 58.9 92 33.7
EL10Ac5g12237 Beta vulgaris HOM05D005504 ORTHO05D002688 9.1e-07 58.2 93 33.3
Lsat_1_v5_gn_8_8121 Lactuca sativa HOM05D005504 ORTHO05D002688 9.1e-07 58.2 93 34.4
arahy.Tifrunner.gnm1.ann1.KDG11W Arachis hypogaea HOM05D005504 ORTHO05D002688 1.2e-06 57.8 87 41.4
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 1.2e-06 57.8 39 74.4
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 1.2e-06 57.8 39 74.4
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 1.2e-06 57.8 39 74.4
arahy.Tifrunner.gnm1.ann1.VCX407 Arachis hypogaea HOM05D000034 ORTHO05D002688 4.5e-06 55.8 89 36.0
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 4.5e-06 55.8 39 71.8
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 7.7e-06 55.1 39 69.2
Potri.005G252500 Populus trichocarpa HOM05D005504 ORTHO05D002688 7.7e-06 55.1 89 32.6


User provided reference genes

Program Settings