Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1497.2 Capsicum annuum HOM05D002564 ORTHO05D011154 3.5e-80 301.6 157 100.0
PGSC0003DMG400011987 Solanum tuberosum HOM05D002564 ORTHO05D011154 6.7e-39 164.5 158 58.9
Nitab4.5_0003596g0040 Nicotiana tabacum HOM05D002564 ORTHO05D011154 7.0e-28 127.9 158 50.0
Nitab4.5_0000563g0280 Nicotiana tabacum HOM05D002564 ORTHO05D011154 2.2e-26 122.9 145 50.3
PGSC0003DMG400011986 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.0e-22 109.8 145 44.8
Solyc01g090010.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 6.3e-21 104.8 159 45.3
Solyc01g089920.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 8.3e-21 104.4 144 44.4
CAN.G1497.3 Capsicum annuum HOM05D002564 ORTHO05D011154 7.7e-19 97.8 139 43.2
Sopen01g035770 Solanum pennellii HOM05D002564 ORTHO05D011154 2.9e-18 95.9 156 39.7
PGSC0003DMG400036059 Solanum tuberosum HOM05D002564 ORTHO05D011154 6.5e-18 94.7 159 40.9
CAN.G1585.17 Capsicum annuum HOM05D002564 ORTHO05D011154 1.1e-17 94.0 156 39.7
Solyc03g113840.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 6.1e-16 88.2 133 39.8
Solyc01g090100.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.0e-15 85.9 143 37.8
Solyc01g057510.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 8.9e-15 84.3 143 37.8
Solyc01g090110.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.0e-14 83.2 143 38.5
Sopen01g035900 Solanum pennellii HOM05D002564 ORTHO05D011154 5.7e-14 81.6 129 38.8
Solyc01g090080.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.2e-13 79.7 158 35.4
Solyc01g090070.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.1e-12 77.4 144 33.3
CAN.G1497.4 Capsicum annuum HOM05D002564 ORTHO05D011154 3.1e-12 75.9 126 39.7
Sopen01g035890 Solanum pennellii HOM05D002564 ORTHO05D011154 3.1e-12 75.9 144 32.6
Solyc01g090000.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.6e-11 73.6 153 32.7
unitig_22.g5495 Utricularia gibba HOM05D002564 ORTHO05D003945 1.7e-10 70.1 143 36.4
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 6.6e-10 68.2 143 35.0
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 6.6e-10 68.2 143 34.3
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 6.6e-10 68.2 143 36.4
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 8.6e-10 67.8 141 35.5
Os02g0125300 Oryza sativa ssp. japonica HOM05D002564 ORTHO05D003945 1.9e-09 66.6 136 35.3
Solyc01g090090.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.3e-09 65.9 139 31.7
PGSC0003DMG400039124 Solanum tuberosum HOM05D002564 ORTHO05D011154 4.3e-09 65.5 138 33.3
Oeu037378.2 Olea europaea HOM05D002564 ORTHO05D003945 5.6e-09 65.1 143 35.0
CAN.G1585.16 Capsicum annuum HOM05D002564 ORTHO05D011154 7.3e-09 64.7 148 34.5
Nn1g00814 Nelumbo nucifera HOM05D002564 ORTHO05D003945 9.5e-09 64.3 136 33.1
Actinidia10860 Actinidia chinensis HOM05D002564 ORTHO05D003945 1.2e-08 63.9 151 31.8
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 1.2e-08 63.9 142 35.2
Zm00001eb208690 Zea mays HOM05D002564 ORTHO05D003945 1.2e-08 63.9 136 33.1
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 1.6e-08 63.5 141 34.0
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.6e-08 63.5 136 32.4
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 2.1e-08 63.2 142 33.8
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 2.8e-08 62.8 142 33.1
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 2.8e-08 62.8 146 31.5
Gohir.D12G216300 Gossypium hirsutum HOM05D002564 ORTHO05D003945 2.8e-08 62.8 141 32.6
Gorai.008G231700 Gossypium raimondii HOM05D002564 ORTHO05D003945 2.8e-08 62.8 141 32.6
PGSC0003DMG400011982 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.8e-08 62.8 127 36.2
Duzib068G0289 Durio zibethinus HOM05D002564 ORTHO05D003945 3.6e-08 62.4 142 33.8
Gohir.A12G213700 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.6e-08 62.4 141 31.9
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 3.6e-08 62.4 142 33.1
THA.LOC104798354 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 3.6e-08 62.4 143 32.9
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 4.7e-08 62.0 141 31.9
Gohir.A11G028900 Gossypium hirsutum HOM05D002564 ORTHO05D003945 4.7e-08 62.0 141 31.9
Gohir.D11G027400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 4.7e-08 62.0 141 31.9
Gorai.007G029900 Gossypium raimondii HOM05D002564 ORTHO05D003945 4.7e-08 62.0 141 31.9
TWI60G0953 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 4.7e-08 62.0 153 30.7
CSS0031131 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 6.1e-08 61.6 142 32.4
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 6.1e-08 61.6 142 32.4
Manes.01G087400 Manihot esculenta HOM05D002564 ORTHO05D003945 6.1e-08 61.6 142 31.7
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 6.1e-08 61.6 142 33.8
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 8.0e-08 61.2 137 33.6
Gohir.A03G004800 Gossypium hirsutum HOM05D002564 ORTHO05D003945 8.0e-08 61.2 141 31.9
Lj2g0011904 Lotus japonicus HOM05D002564 ORTHO05D003945 8.0e-08 61.2 141 33.3
Potri.001G151800 Populus trichocarpa HOM05D002564 ORTHO05D003945 8.0e-08 61.2 142 32.4
Ciclev10021901m.g Citrus clementina HOM05D002564 ORTHO05D003945 1.0e-07 60.8 143 33.6
Gorai.004G193400 Gossypium raimondii HOM05D002564 ORTHO05D003945 1.0e-07 60.8 141 32.6
Hma1.2p1_3142F.1_g333090 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 31.7
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 33.1
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 1.0e-07 60.8 153 30.7
Phvul.003G224400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 31.0
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 33.8
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 33.8
Thecc.03G242800 Theobroma cacao HOM05D002564 ORTHO05D003945 1.0e-07 60.8 142 33.1
Atru.chr9.1224 Acer truncatum HOM05D002564 ORTHO05D003945 1.4e-07 60.5 143 31.5
MELO3C003332.2 Cucumis melo HOM05D002564 ORTHO05D003945 1.4e-07 60.5 142 32.4
Glyma.01G205200 Glycine max HOM05D002564 ORTHO05D003945 1.4e-07 60.5 143 33.6
Gohir.A08G165400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.4e-07 60.5 141 33.3
Manes.02G044200 Manihot esculenta HOM05D002564 ORTHO05D003945 1.4e-07 60.5 142 31.7
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.4e-07 60.5 142 33.1
Ah.07g199070 Amaranthus hybridus HOM05D002564 ORTHO05D003945 1.8e-07 60.1 148 31.8
Gohir.D08G184100 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.8e-07 60.1 141 32.6
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 1.8e-07 60.1 142 32.4
Psat2g176040 Pisum sativum HOM05D002564 ORTHO05D003945 1.8e-07 60.1 141 32.6
DCAR_000212 Daucus carota HOM05D002564 ORTHO05D003945 2.3e-07 59.7 142 33.1
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 2.3e-07 59.7 142 32.4
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 2.3e-07 59.7 147 31.3
SGA_v2.0_scaffold6G03164 Striga asiatica HOM05D002564 ORTHO05D003945 2.3e-07 59.7 143 33.6
COL.COLO4_07510 Corchorus olitorius HOM05D002564 ORTHO05D003945 3.0e-07 59.3 143 32.9
CsaV3_3G049840 Cucumis sativus L. HOM05D002564 ORTHO05D003945 3.0e-07 59.3 142 31.7
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 3.0e-07 59.3 143 30.8
arahy.Tifrunner.gnm1.ann1.2KFK0B Arachis hypogaea HOM05D002564 ORTHO05D003945 4.0e-07 58.9 137 32.8
arahy.Tifrunner.gnm1.ann1.68ECIB Arachis hypogaea HOM05D002564 ORTHO05D003945 4.0e-07 58.9 137 32.8
CDE12G0326 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 4.0e-07 58.9 143 33.6
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 4.0e-07 58.9 136 32.4
Duzib205G0006 Durio zibethinus HOM05D002564 ORTHO05D003945 4.0e-07 58.9 128 33.6
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 4.0e-07 58.9 141 33.3
HPP92_022270 Vanilla planifolia HOM05D002564 ORTHO05D003945 4.0e-07 58.9 128 32.8
Dinv28867 Davidia involucrata HOM05D002564 ORTHO05D003945 5.2e-07 58.5 128 31.2
Glyma.11G037700 Glycine max HOM05D002564 ORTHO05D003945 5.2e-07 58.5 143 32.9
Phvul.002G001400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 5.2e-07 58.5 143 32.2
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 5.2e-07 58.5 142 31.0
GSVIVG01005380001 Vitis vinifera HOM05D002564 ORTHO05D003945 5.2e-07 58.5 143 32.2
Aa31LG6G330 Aethionema arabicum HOM05D002564 ORTHO05D003945 6.8e-07 58.2 128 32.0
AUR62018857 Chenopodium quinoa HOM05D002564 ORTHO05D003945 6.8e-07 58.2 143 32.9
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 6.8e-07 58.2 143 33.6
THA.LOC104806682 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 6.8e-07 58.2 143 30.8
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 6.8e-07 58.2 151 30.5
VMungo1215G2437 Vigna mungo HOM05D002564 ORTHO05D003945 6.8e-07 58.2 143 33.6
AUR62007154 Chenopodium quinoa HOM05D002564 ORTHO05D003945 8.9e-07 57.8 143 32.9
Ca_24608_v3 Cicer arietinum L. HOM05D002564 ORTHO05D003945 8.9e-07 57.8 137 33.6
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 8.9e-07 57.8 143 30.1
AL7G37010 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 1.2e-06 57.4 136 30.1
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 1.2e-06 57.4 142 31.7
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 1.2e-06 57.4 143 30.1
TPR.G31430 Trifolium pratense HOM05D002564 ORTHO05D003945 1.2e-06 57.4 137 32.8
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 1.2e-06 57.4 153 28.8
HPP92_022395 Vanilla planifolia HOM05D002564 ORTHO05D003945 1.2e-06 57.4 128 32.0
VMungo0251G2763 Vigna mungo HOM05D002564 ORTHO05D003945 1.2e-06 57.4 142 31.0
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 1.5e-06 57.0 136 32.4
Sed0002752 Sechium edule HOM05D002564 ORTHO05D003945 1.5e-06 57.0 142 31.7
Sed0004432 Sechium edule HOM05D002564 ORTHO05D003945 1.5e-06 57.0 142 31.0
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 2.0e-06 56.6 128 31.2
AT5G47120 Arabidopsis thaliana HOM05D002564 ORTHO05D003945 2.0e-06 56.6 128 31.2
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 2.0e-06 56.6 142 32.4
ClCG09G012780 Citrullus lanatus HOM05D002564 ORTHO05D003945 2.0e-06 56.6 141 30.5
Lsat_1_v5_gn_6_94980 Lactuca sativa HOM05D002564 ORTHO05D003945 2.0e-06 56.6 142 32.4
Medtr5g013340 Medicago truncatula HOM05D002564 ORTHO05D003945 2.0e-06 56.6 144 31.2
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 2.0e-06 56.6 137 32.1
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 2.6e-06 56.2 136 32.4
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 2.6e-06 56.2 136 32.4
Carub.0008s0063 Capsella rubella HOM05D002564 ORTHO05D003945 2.6e-06 56.2 128 30.5
HanXRQChr03g0089811 Helianthus annuus HOM05D002564 ORTHO05D003945 2.6e-06 56.2 142 32.4
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 2.6e-06 56.2 141 29.1
Sc22g0001110 Simmondsia chinensis HOM05D002564 ORTHO05D003945 2.6e-06 56.2 153 30.7
ATR0665G511 Amborella trichopoda HOM05D002564 ORTHO05D003945 3.4e-06 55.8 143 31.5
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 3.4e-06 55.8 136 31.6
BolC2t10881H Brassica oleracea HOM05D002564 ORTHO05D003945 3.4e-06 55.8 136 31.6
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 3.4e-06 55.8 136 30.1
Glyma.05G064700 Glycine max HOM05D002564 ORTHO05D003945 3.4e-06 55.8 142 30.3
PGR042G0532 Punica granatum HOM05D002564 ORTHO05D003945 3.4e-06 55.8 137 30.7
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 4.4e-06 55.5 142 31.7
ECA240G1580 Erigeron canadensis HOM05D002564 ORTHO05D003945 4.4e-06 55.5 142 31.7
Eucgr.E00365 Eucalyptus grandis HOM05D002564 ORTHO05D003945 4.4e-06 55.5 151 27.8
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 4.4e-06 55.5 143 28.0
HanXRQChr13g0418211 Helianthus annuus HOM05D002564 ORTHO05D003945 5.8e-06 55.1 141 31.9
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 5.8e-06 55.1 136 30.1
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 7.5e-06 54.7 147 29.3
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 7.5e-06 54.7 143 30.8
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 7.5e-06 54.7 143 30.8
Glyma.17G146500 Glycine max HOM05D002564 ORTHO05D003945 7.5e-06 54.7 148 27.7
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 7.5e-06 54.7 143 28.0
Solyc01g090030.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.5e-06 54.7 157 30.6
Carub.0007s2380 Capsella rubella HOM05D002564 ORTHO05D003945 9.8e-06 54.3 128 29.7
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 9.8e-06 54.3 146 28.8
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 9.8e-06 54.3 146 28.1
Hma1.2p1_0840F.1_g226550 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 9.8e-06 54.3 146 32.2


User provided reference genes

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