Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.8e-70 268.5 133 100.0
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.5e-43 177.6 121 80.2
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.4e-42 173.7 92 94.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.2e-41 173.3 92 93.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.1e-41 172.6 92 93.5
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.1e-41 172.6 92 93.5
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 2.7e-41 172.2 92 92.4
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.4e-40 169.9 92 91.3
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.8e-40 169.5 91 92.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.8e-40 169.5 121 76.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.8e-40 169.5 121 76.0
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 2.3e-40 169.1 91 91.2
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.0e-40 168.7 91 93.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.0e-40 168.7 91 93.4
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.9e-40 168.3 91 91.2
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 5.2e-40 167.9 92 90.2
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-40 167.9 91 90.1
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-40 167.9 91 90.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.2e-40 167.9 91 90.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 5.2e-40 167.9 91 91.2
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 6.7e-40 167.5 121 75.2
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 8.8e-40 167.2 92 90.2
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 8.8e-40 167.2 91 91.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.1e-39 166.8 91 90.1
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.1e-39 166.8 91 90.1
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.5e-39 166.4 91 86.8
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.5e-39 166.4 91 89.0
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.5e-39 166.4 91 92.3
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.5e-39 166.4 91 90.1
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.0e-39 166.0 92 89.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 2.0e-39 166.0 91 89.0
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-39 166.0 91 89.0
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 2.0e-39 166.0 92 89.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.0e-39 166.0 91 90.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.6e-39 165.6 92 90.2
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.6e-39 165.6 92 90.2
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.6e-39 165.6 92 90.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.6e-39 165.6 91 87.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.6e-39 165.6 92 89.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.4e-39 164.9 88 92.0
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 4.4e-39 164.9 91 89.0
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 4.4e-39 164.9 91 89.0
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 4.4e-39 164.9 95 89.5
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 4.4e-39 164.9 92 89.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.4e-39 164.9 92 87.0
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 4.4e-39 164.9 91 89.0
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 5.7e-39 164.5 91 90.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.7e-39 164.5 91 87.9
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 7.4e-39 164.1 92 88.0
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 7.4e-39 164.1 91 89.0
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 7.4e-39 164.1 91 90.1
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.4e-39 164.1 91 89.0
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 7.4e-39 164.1 91 90.1
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 7.4e-39 164.1 90 90.0
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 7.4e-39 164.1 91 90.1
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 7.4e-39 164.1 92 88.0
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 9.7e-39 163.7 92 85.9
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 9.7e-39 163.7 92 85.9
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 9.7e-39 163.7 92 85.9
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 9.7e-39 163.7 91 89.0
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 9.7e-39 163.7 91 90.1
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 9.7e-39 163.7 91 89.0
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.3e-38 163.3 91 87.9
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.7e-38 162.9 91 89.0
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.7e-38 162.9 95 85.3
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.7e-38 162.9 91 89.0
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.7e-38 162.9 91 87.9
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.2e-38 162.5 92 84.8
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.2e-38 162.5 92 84.8
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.2e-38 162.5 92 84.8
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.2e-38 162.5 91 86.8
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.2e-38 162.5 92 84.8
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.8e-38 162.2 92 83.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.8e-38 162.2 92 88.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.8e-38 162.2 91 87.9
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.7e-38 161.8 92 87.0
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.7e-38 161.8 104 77.9
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 3.7e-38 161.8 91 86.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.7e-38 161.8 91 89.0
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.8e-38 161.4 91 89.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 4.8e-38 161.4 91 87.9
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 6.3e-38 161.0 91 89.0
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.3e-38 161.0 92 84.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.3e-38 161.0 92 85.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.3e-38 161.0 92 85.9
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.1e-37 160.2 91 87.9
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.1e-37 160.2 91 87.9
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.4e-37 159.8 92 84.8
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-37 159.8 91 89.0
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.4e-37 159.8 92 87.0
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.8e-37 159.5 92 85.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.8e-37 159.5 91 85.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.4e-37 159.1 91 85.7
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.4e-37 159.1 92 82.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.1e-37 158.7 92 83.7
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.1e-37 158.3 91 84.6
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 4.1e-37 158.3 92 87.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.1e-37 158.3 90 87.8
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.2e-36 156.8 92 83.7
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.2e-36 156.8 91 85.7
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.2e-36 156.8 91 85.7
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.2e-36 156.8 92 84.8
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.6e-36 156.4 91 85.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.0e-36 156.0 91 83.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.0e-36 156.0 92 83.7
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.6e-36 155.6 92 82.6
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.6e-36 155.6 91 81.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.6e-36 155.6 91 87.9
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 3.5e-36 155.2 93 84.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 4.5e-36 154.8 91 83.5
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.5e-36 154.8 92 82.6
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 5.9e-36 154.5 92 82.6
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.7e-36 154.1 91 82.4
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 7.7e-36 154.1 119 69.7
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.7e-35 152.9 90 86.7
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.9e-35 152.1 91 85.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.9e-35 152.1 93 81.7
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 8.5e-35 150.6 91 83.5
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 5.5e-34 147.9 94 80.9
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 7.2e-34 147.5 92 80.4
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.2e-33 146.7 90 78.9
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.7e-33 145.6 102 73.5
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 4.7e-33 144.8 91 78.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.3e-32 142.5 90 74.4
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 9.7e-31 137.1 91 76.9
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-27 125.9 85 76.5
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 5.2e-24 114.8 89 66.3
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 3.3e-10 68.9 81 56.8
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.7e-09 65.1 34 88.2


User provided reference genes

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