Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2737.6 1398 100.0
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2615.5 1399 94.1
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2610.1 1399 94.0
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2590.8 1398 93.0
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2576.6 1410 92.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2343.9 1401 83.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2343.5 1402 82.8
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2298.9 1405 81.6
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2297.3 1401 81.0
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2284.6 1416 80.1
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2273.8 1402 80.3
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2264.6 1403 79.8
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2264.6 1403 80.0
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2263.4 1402 79.7
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2263.0 1402 80.1
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2253.8 1404 79.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2252.2 1404 79.7
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2250.7 1402 79.4
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2250.3 1399 80.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2249.9 1405 79.6
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2249.9 1401 79.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2246.1 1401 79.5
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1401 78.8
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2243.8 1401 78.9
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2243.0 1399 79.8
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2241.8 1398 79.3
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2241.5 1404 79.4
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2239.2 1401 78.9
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2232.2 1402 79.4
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2231.1 1400 78.4
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2231.1 1401 78.4
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2224.9 1399 78.9
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2217.6 1400 78.0
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2217.2 1402 78.2
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2216.0 1398 78.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2213.0 1413 77.8
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2206.8 1402 78.2
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2205.6 1399 78.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2205.3 1403 77.2
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2198.7 1399 78.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2196.4 1403 77.0
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2195.6 1352 80.1
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2193.3 1438 76.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2187.9 1432 76.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1401 76.6
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1404 76.6
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2182.1 1401 76.7
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2181.8 1401 76.3
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2176.4 1401 76.5
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2174.4 1482 73.5
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2166.7 1403 76.1
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2165.2 1402 76.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2164.4 1401 76.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2163.7 1398 76.5
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2162.5 1391 76.6
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1390 77.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2157.1 1415 76.9
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2145.5 1388 76.9
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2131.7 1399 76.1
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2130.5 1420 75.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2127.8 1430 74.2
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2125.5 1416 75.1
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2121.3 1403 75.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2114.3 1409 74.6
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2114.0 1426 75.7
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2112.4 1416 74.7
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2108.2 1498 71.1
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2104.3 1416 74.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2103.9 1416 74.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2102.4 1415 74.3
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2102.4 1416 74.3
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2098.6 1416 74.1
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2097.8 1236 83.3
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2093.2 1266 81.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2087.0 1426 73.8
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2086.6 1381 75.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2069.3 1711 63.9
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2010.3 1316 77.0
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1988.0 1337 74.4
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1979.5 1337 73.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1969.9 1389 73.1
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1965.7 1342 73.8
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1964.5 1337 74.0
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1932.1 1373 72.0
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1892.9 1381 68.1
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1892.1 1179 78.7
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1833.9 1377 66.8
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1827.4 1406 65.4
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1768.1 927 94.8
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1738.4 1517 61.0
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1458.7 1168 62.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1395.2 1363 52.2
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1391.3 975 72.6
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1367.8 835 81.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1341.6 1333 50.8
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1320.8 1349 50.0
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1319.3 1360 49.8
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1205.3 728 82.4
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1189.5 878 66.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1181.0 792 75.3
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1164.4 815 71.7
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1157.9 761 74.6
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 5.2e-276 955.3 602 78.2
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.3e-274 950.7 790 58.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.3e-247 860.1 601 72.4
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 2.9e-218 763.5 489 78.5
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.0e-202 711.8 505 70.1
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 4.1e-188 663.3 533 62.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 3.7e-181 640.2 1491 28.7
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.9e-156 558.1 534 57.1
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.7e-139 501.1 380 66.1
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.7e-138 496.5 529 51.2
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-124 452.2 538 49.8
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.4e-102 377.9 224 79.5
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.2e-91 342.8 221 74.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.6e-86 325.9 192 79.7
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.9e-84 318.9 418 44.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.3e-66 258.8 297 49.2
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.7e-62 245.4 147 80.3
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 3.3e-52 211.8 139 74.1
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.6e-44 184.5 128 64.8
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 4.9e-40 171.4 116 75.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.8e-34 152.9 133 63.2
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.0e-33 149.4 89 74.2
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.9e-31 142.9 107 70.1
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.0e-29 137.1 82 75.6
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 3.9e-29 135.2 113 66.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.1e-28 133.7 159 41.5
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.5e-28 132.5 83 78.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 2.1e-27 129.4 210 45.2
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 6.2e-27 127.9 112 56.2
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 8.1e-27 127.5 83 69.9
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.0e-26 125.2 89 70.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.2e-24 119.4 239 36.8
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 6.0e-22 111.3 162 40.1
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.8e-21 109.8 98 50.0
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.5e-20 106.7 85 65.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 8.1e-19 100.9 124 46.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.5e-17 96.7 109 48.6
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.4e-17 95.5 53 86.8
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.0e-14 84.7 49 87.8
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 6.7e-13 81.3 54 74.1
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-11 77.0 41 90.2
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.7e-11 75.5 42 88.1
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 9.0e-10 70.9 89 41.6
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.0e-08 67.4 137 31.4
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.2e-08 66.2 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 2.2e-08 66.2 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.2e-08 66.2 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.2e-08 66.2 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 2.2e-08 66.2 44 75.0
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.9e-07 63.2 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 3.2e-07 62.4 43 72.1
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 9.3e-07 60.8 56 48.2
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 9.3e-07 60.8 56 48.2


User provided reference genes

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