Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.5e-245 850.5 423 100.0
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 3.7e-217 758.1 424 90.3
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 8.3e-217 756.9 413 91.3
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.1e-208 728.4 402 91.3
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.7e-207 725.3 407 90.2
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.2e-172 610.1 421 71.3
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 6.2e-172 607.8 412 71.6
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 6.2e-172 607.8 410 71.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.0e-171 605.1 410 72.4
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.5e-170 603.2 405 74.1
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.5e-170 603.2 405 71.9
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.7e-169 599.7 405 72.6
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 6.4e-169 597.8 416 70.4
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 8.4e-169 597.4 410 71.5
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 3.2e-168 595.5 405 71.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 3.2e-168 595.5 420 69.8
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 7.1e-168 594.3 420 69.3
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 9.3e-168 594.0 416 70.4
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.2e-167 593.6 410 70.5
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.2e-167 593.6 405 72.3
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.2e-167 593.6 408 71.3
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 2.1e-167 592.8 410 69.5
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 4.6e-167 591.7 420 67.9
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.0e-166 590.5 409 70.9
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.3e-166 590.1 421 71.0
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 2.3e-166 589.3 410 69.8
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.7e-166 587.4 410 71.0
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 8.7e-166 587.4 410 68.3
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.5e-165 586.6 418 70.1
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.5e-165 585.9 411 68.4
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 3.3e-165 585.5 440 67.0
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 4.3e-165 585.1 428 68.0
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 7.3e-165 584.3 411 69.6
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 9.6e-165 583.9 410 68.8
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.3e-164 583.6 412 68.4
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.3e-164 583.6 412 69.2
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.3e-164 583.6 409 68.7
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 8.1e-164 580.9 420 67.6
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 8.1e-164 580.9 444 66.2
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 6.9e-163 577.8 406 70.4
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.5e-162 576.6 410 67.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 6.4e-161 571.2 411 68.6
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 3.2e-160 568.9 408 68.9
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 5.4e-160 568.2 410 68.5
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 4.6e-159 565.1 487 59.8
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.0e-158 562.4 418 65.6
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 3.3e-157 558.9 466 63.5
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 9.6e-157 557.4 424 66.5
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 8.1e-156 554.3 405 66.9
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 8.1e-156 554.3 407 68.3
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 2.4e-155 552.7 412 64.6
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 2.4e-155 552.7 369 74.3
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 4.0e-155 552.0 487 58.7
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.6e-154 549.3 416 64.2
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.4e-153 544.7 304 90.5
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.9e-152 543.1 410 67.1
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.4e-152 542.7 410 66.8
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 3.2e-152 542.3 405 65.2
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 6.0e-151 538.1 375 70.4
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 5.6e-149 531.6 360 71.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.1e-148 529.6 429 62.0
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 8.2e-148 527.7 414 64.7
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 7.6e-146 521.2 401 61.6
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 2.9e-145 519.2 423 60.8
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.5e-144 516.2 407 62.9
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.3e-140 503.8 422 62.3
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.4e-136 490.3 453 57.6
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 3.2e-136 489.2 361 67.6
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 1.2e-135 487.3 356 67.7
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 2.1e-135 486.5 329 73.3
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 7.9e-135 484.6 420 59.5
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.3e-132 477.2 342 70.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 8.2e-132 474.6 353 67.7
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 2.1e-127 459.9 465 55.3
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.4e-126 457.2 429 55.5
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.9e-118 429.1 424 51.9
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.2e-114 417.5 394 55.1
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 2.6e-114 416.4 401 53.1
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.4e-110 404.1 268 73.5
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-109 400.2 434 50.0
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 6.3e-108 395.2 277 70.8
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 2.7e-106 389.8 416 48.6
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.5e-104 384.0 275 70.2
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 7.5e-101 371.7 560 41.2
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.1e-99 367.9 276 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 5.0e-97 359.0 402 46.8
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.4e-94 350.9 397 46.3
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-94 350.5 422 44.8
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 4.9e-92 342.4 472 41.9
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.0e-91 338.6 413 44.1
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-90 337.8 416 44.0
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.2e-87 327.8 278 57.2
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.1e-87 327.0 405 42.7
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 4.7e-87 325.9 413 42.6
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 5.2e-86 322.4 264 62.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 7.5e-85 318.5 226 69.5
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.6e-82 310.8 317 50.2
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.6e-80 302.4 415 41.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 1.8e-78 297.4 412 41.7
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.2e-77 294.7 244 59.8
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 5.1e-73 279.3 188 71.8
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.1e-70 270.0 414 38.4
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.8e-62 244.2 188 66.5
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.1e-62 243.4 381 37.5
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.5e-58 229.9 365 37.3
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 7.8e-58 228.8 439 36.7
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 2.0e-53 214.2 148 70.3
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 3.4e-53 213.4 160 65.6
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.7e-50 203.8 116 86.2
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 7.8e-50 202.2 388 34.0
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 2.8e-47 193.7 401 32.4
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.6e-47 193.4 328 36.0
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 8.1e-47 192.2 191 55.5
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.9e-46 189.1 322 38.2
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 2.5e-40 170.6 114 75.4
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 2.8e-39 167.2 263 39.5
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.9e-38 162.5 133 57.9
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.3e-36 158.3 104 76.9
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 2.5e-35 154.1 216 44.9
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-35 153.3 275 35.3
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-33 147.9 122 58.2
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.0e-33 147.1 182 44.0
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.1e-31 141.0 401 28.2
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 9.0e-30 135.6 107 66.4
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.2e-29 135.2 122 61.5
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-29 135.2 226 35.0
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-28 131.7 143 47.6
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.2e-27 127.1 112 59.8
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.6e-26 123.2 215 38.1
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 4.3e-24 116.7 85 70.6
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 2.2e-20 104.4 83 65.1
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.5e-20 102.4 68 63.2
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.2e-18 98.6 54 79.6
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.5e-16 90.9 104 38.5
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.3e-15 86.3 79 49.4
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 2.2e-12 77.8 251 26.3
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.1e-06 58.9 53 50.9
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.1e-06 58.9 53 54.7
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.1e-06 57.0 89 36.0


User provided reference genes

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