Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.6e-186 656.0 348 100.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 3.8e-175 618.2 353 94.3
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.9e-174 615.9 353 94.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 2.4e-174 615.5 353 93.5
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 7.4e-171 604.0 353 92.4
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 6.2e-170 600.9 353 91.2
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 8.7e-156 553.9 354 86.7
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.8e-137 493.0 357 74.2
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 7.0e-137 491.1 358 74.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.9e-134 483.0 357 74.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.6e-133 479.9 363 73.8
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.1e-133 478.0 357 73.1
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-132 476.5 359 71.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 8.8e-132 474.2 361 72.9
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.0e-131 473.0 352 72.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.2e-130 469.5 350 73.4
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 4.8e-130 468.4 356 74.4
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 6.3e-130 468.0 357 72.3
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.8e-129 466.5 359 71.6
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.1e-129 465.7 322 78.9
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.2e-128 463.8 360 73.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 4.5e-128 461.8 349 72.8
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.2e-127 459.5 363 70.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 5.0e-127 458.4 360 71.7
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.1e-126 457.2 326 75.5
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.9e-126 456.4 354 72.3
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.2e-126 455.7 330 74.5
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 5.5e-126 454.9 358 72.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 9.4e-126 454.1 358 71.8
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.2e-125 453.8 362 70.7
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.2e-125 453.8 332 72.6
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.2e-125 453.8 364 70.1
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.6e-125 453.4 359 72.1
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.1e-125 453.0 334 73.7
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.6e-125 452.2 322 75.5
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 3.6e-125 452.2 359 70.8
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 6.1e-125 451.4 358 71.8
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 8.0e-125 451.1 359 70.8
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 8.0e-125 451.1 331 74.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 8.0e-125 451.1 301 76.1
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 8.0e-125 451.1 328 75.3
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.0e-124 450.7 346 72.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.4e-124 450.3 362 69.9
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 5.2e-124 448.4 349 71.6
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 8.8e-124 447.6 357 70.6
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.2e-123 447.2 370 69.7
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.5e-123 446.8 319 74.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.0e-123 446.4 332 72.9
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 2.6e-123 446.0 386 65.0
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 3.4e-123 445.7 317 74.1
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 3.4e-123 445.7 326 71.5
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.4e-123 445.7 342 71.1
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.8e-123 444.1 357 70.0
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 9.8e-123 444.1 308 76.6
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 70.0
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.3e-122 443.7 357 67.5
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.2e-122 443.0 334 71.6
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 358 67.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 328 70.7
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 340 72.9
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 3.7e-122 442.2 358 69.6
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 3.7e-122 442.2 365 69.0
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.3e-122 441.4 318 73.6
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.3e-122 441.4 318 73.6
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.1e-121 440.7 358 67.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.4e-121 440.3 332 70.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.4e-121 440.3 313 72.2
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.8e-121 439.9 265 83.8
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.8e-121 439.9 265 83.8
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.4e-121 439.5 344 70.3
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 4.1e-121 438.7 326 72.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 5.4e-121 438.3 352 69.9
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.6e-120 436.8 351 69.5
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.6e-120 436.8 320 74.1
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.0e-120 436.4 344 69.5
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.7e-120 436.0 281 79.4
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 3.5e-120 435.6 356 70.8
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.5e-120 435.6 320 73.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.5e-120 435.6 320 73.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.5e-120 435.6 320 73.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.5e-120 435.3 320 74.1
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.5e-120 435.3 347 69.5
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.9e-120 434.9 378 65.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 5.9e-120 434.9 320 73.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.7e-120 434.5 320 73.8
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.0e-119 434.1 357 66.9
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.7e-119 433.3 313 73.2
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 2.9e-119 432.6 320 71.9
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 5.0e-119 431.8 259 86.1
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.1e-118 430.6 359 68.2
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.5e-118 430.3 337 69.1
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 3.2e-118 429.1 270 81.5
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.7e-117 426.0 278 80.6
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.7e-117 425.2 308 74.7
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 4.7e-117 425.2 278 80.6
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 8.0e-117 424.5 354 68.9
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.4e-116 423.7 290 77.6
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.8e-116 423.3 387 63.3
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.0e-116 422.5 307 74.6
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.0e-116 422.2 286 78.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 6.8e-116 421.4 278 79.9
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 8.8e-116 421.0 317 73.2
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.8e-116 421.0 298 74.8
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.0e-115 419.9 278 79.5
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.0e-115 419.9 307 73.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 4.4e-115 418.7 278 78.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 7.5e-115 417.9 277 78.7
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 7.5e-115 417.9 277 78.7
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 7.5e-115 417.9 278 78.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 9.8e-115 417.5 331 70.1
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 9.8e-115 417.5 282 78.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-114 416.8 298 74.2
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-114 416.4 331 70.7
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 2.8e-114 416.0 287 75.3
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.8e-114 416.0 278 78.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 4.9e-114 415.2 356 66.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 6.3e-114 414.8 278 78.1
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.4e-113 412.9 357 65.3
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 6.6e-111 404.8 246 85.4
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.5e-110 402.9 274 76.6
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.6e-109 399.1 416 57.0
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 3.6e-109 399.1 345 65.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 4.7e-109 398.7 351 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 3.4e-107 392.5 273 76.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.5e-107 391.3 301 70.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 3.2e-105 386.0 346 64.2
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.2e-104 384.0 225 88.0
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.0e-104 383.3 295 69.2
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 7.8e-104 381.3 274 73.7
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 7.8e-104 381.3 249 77.9
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.3e-103 379.8 265 74.3
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 3.9e-103 379.0 251 76.5
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 8.6e-103 377.9 243 79.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 3.3e-102 375.9 318 67.6
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.0e-99 366.7 296 66.2
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.7e-95 353.6 296 66.9
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.2e-91 340.9 281 61.9
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 8.3e-90 334.7 289 65.1
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.9e-89 333.6 248 70.2
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 5.1e-87 325.5 251 68.1
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 3.2e-81 306.2 333 55.6
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 6.6e-71 271.9 250 61.6
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 3.9e-55 219.5 149 75.8
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-54 217.2 149 75.2
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.6e-48 197.6 164 64.6
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.1e-48 197.2 193 58.0
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 6.0e-48 195.7 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.9e-35 152.5 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.0e-34 151.8 99 79.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 3.7e-29 133.3 129 57.4
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.4e-28 130.6 112 61.6
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 9.7e-22 108.6 102 61.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.2e-21 107.5 61 88.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 8.2e-21 105.5 64 87.5


User provided reference genes

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