Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 3.2e-193 678.3 364 100.0
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 3.3e-166 588.6 364 87.9
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.3e-166 588.6 364 87.9
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 8.2e-165 583.9 364 87.1
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 6.6e-146 521.2 325 86.5
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.1e-136 489.6 304 87.8
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 3.9e-130 468.8 360 71.1
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.5e-129 466.1 364 69.8
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.4e-126 455.7 363 68.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.3e-122 443.0 360 68.6
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 5.1e-122 441.8 349 69.9
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.5e-121 440.3 362 66.9
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 2.5e-121 439.5 363 63.9
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.3e-121 439.1 363 66.4
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 6.2e-120 434.9 363 66.1
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 8.9e-119 431.0 362 65.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.2e-118 430.6 363 65.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 7.6e-118 427.9 363 65.0
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.4e-116 423.7 360 65.0
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.4e-116 422.9 366 65.6
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 9.2e-116 421.0 364 63.5
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 3.5e-115 419.1 363 62.5
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-114 417.2 362 63.0
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.7e-114 416.8 362 63.0
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 5.1e-114 415.2 406 59.1
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.9e-113 413.3 364 61.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 5.6e-113 411.8 364 61.3
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 7.3e-113 411.4 364 62.1
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 7.3e-113 411.4 363 61.2
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 7.3e-113 411.4 368 63.3
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 9.6e-113 411.0 364 61.0
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 2.1e-112 409.8 365 63.8
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 3.6e-112 409.1 363 61.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 3.6e-112 409.1 363 61.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.8e-112 408.7 363 60.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.4e-111 407.1 363 60.3
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 2.4e-111 406.4 364 62.6
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.3e-111 405.2 426 56.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 4.4e-110 402.1 361 60.9
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.6e-110 401.4 363 60.6
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.4e-109 397.9 363 59.2
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 8.4e-109 397.9 363 62.0
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.9e-108 396.7 363 59.0
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.9e-108 396.7 368 60.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.4e-108 396.4 363 58.7
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.4e-108 396.4 363 58.7
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 2.4e-108 396.4 362 60.5
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 5.4e-108 395.2 408 57.8
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 7.1e-108 394.8 367 60.5
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.2e-107 394.0 372 60.8
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.1e-107 393.3 345 62.3
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.7e-107 392.9 363 58.4
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.7e-107 392.9 358 61.5
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 3.5e-107 392.5 366 61.7
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.1e-105 387.5 363 60.6
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.5e-105 387.1 363 59.8
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.5e-105 386.3 364 59.6
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.5e-105 386.3 363 57.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.1e-104 383.3 363 58.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 6.2e-104 381.7 368 61.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.4e-103 380.6 364 59.3
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.4e-103 380.6 362 59.1
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 3.1e-103 379.4 363 58.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 6.9e-103 378.3 369 61.0
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.2e-102 377.5 362 59.9
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.0e-102 376.7 359 59.3
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.3e-101 374.0 321 65.4
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.2e-101 373.2 360 57.2
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-100 370.9 359 58.8
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 4.2e-100 369.0 365 54.2
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 7.1e-100 368.2 340 59.4
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.0e-98 362.8 364 55.2
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.6e-97 358.6 363 54.5
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.2e-96 355.1 363 54.3
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-95 352.8 365 57.0
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 2.0e-94 350.1 363 54.3
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 1.0e-93 347.8 362 55.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.0e-93 347.8 393 53.9
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.3e-93 347.4 363 53.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 6.4e-93 345.1 363 52.3
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 1.2e-91 340.9 363 52.3
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 3.0e-90 336.3 365 55.1
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 8.7e-90 334.7 366 51.9
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.7e-90 334.7 363 51.8
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.5e-89 334.0 301 63.8
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.3e-89 332.8 365 52.9
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 5.7e-89 332.0 348 53.7
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.8e-88 329.7 364 51.9
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 2.8e-88 329.7 365 53.7
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 6.2e-88 328.6 364 51.4
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.0e-87 325.9 364 53.0
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 6.9e-87 325.1 370 51.9
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.6e-86 323.2 366 50.5
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.5e-86 322.4 366 50.5
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 7.6e-86 321.6 366 50.5
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.2e-84 315.8 307 58.3
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 9.3e-84 314.7 307 61.6
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.5e-83 312.8 365 50.1
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.6e-83 312.4 365 49.3
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 7.9e-83 311.6 301 57.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.0e-82 311.2 364 50.5
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.5e-81 307.4 302 57.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 8.2e-80 301.6 283 59.4
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.1e-79 301.2 364 47.8
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-79 300.8 320 54.7
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 5.0e-77 292.4 350 49.7
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-76 290.8 348 48.9
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 4.6e-75 285.8 366 48.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 6.1e-75 285.4 343 48.7
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 7.9e-75 285.0 366 44.5
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 9.7e-73 278.1 347 49.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.0e-66 258.1 367 42.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.4e-66 257.7 358 42.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.0e-65 253.8 237 61.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 7.4e-65 251.9 238 58.4
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.8e-64 250.0 349 42.7
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 4.8e-64 249.2 362 42.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 4.8e-64 249.2 247 58.7
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 7.0e-63 245.4 275 52.7
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.5e-62 243.0 349 42.7
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.2e-59 234.6 247 57.5
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 1.4e-58 231.1 353 44.2
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.2e-56 223.8 357 41.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.9e-52 210.7 236 51.3
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.1e-51 207.2 274 48.5
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.5e-49 201.1 237 54.0
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 3.8e-45 186.4 324 39.2
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 8.0e-43 178.7 298 40.9
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 5.9e-38 162.5 366 32.0
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.0e-37 161.8 151 65.6
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 6.8e-34 149.1 424 29.5
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 2.6e-33 147.1 128 62.5
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 9.2e-31 138.7 125 54.4
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 2.9e-29 133.7 372 29.8
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.9e-28 131.0 183 45.9
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 8.0e-27 125.6 157 54.1
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.4e-15 88.2 247 29.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.3e-12 77.0 55 69.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 3.3e-12 77.0 56 64.3
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 4.0e-10 70.1 56 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.2e-09 68.6 196 31.1
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.5e-09 68.2 261 26.4


User provided reference genes

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