Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 9.9e-225 783.1 390 100.0
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 2.5e-212 741.9 390 94.4
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 2.5e-212 741.9 390 94.4
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 1.8e-205 719.2 389 90.0
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 6.1e-198 694.1 369 91.1
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 6.7e-197 690.6 370 90.8
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 2.0e-188 662.5 399 81.5
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 5.7e-188 661.0 390 81.8
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.8e-187 658.7 390 81.5
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 3.7e-187 658.3 390 81.5
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.4e-186 656.4 393 81.4
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 2.4e-186 655.6 391 81.3
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 4.1e-186 654.8 381 82.7
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 9.1e-186 653.7 393 81.7
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 5.0e-184 647.9 383 79.9
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 1.5e-183 646.4 383 80.9
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 4.2e-183 644.8 390 80.5
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 9.4e-183 643.7 390 79.7
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 9.4e-183 643.7 383 79.4
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 1.6e-182 642.9 384 80.5
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 2.7e-182 642.1 384 80.7
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 3.6e-182 641.7 383 81.5
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 6.1e-182 641.0 390 79.7
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 1.0e-181 640.2 383 80.9
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 1.0e-181 640.2 383 80.7
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 1.4e-181 639.8 393 78.9
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.8e-181 639.4 383 81.5
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 1.8e-181 639.4 383 81.7
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 6.7e-181 637.5 393 78.9
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.5e-180 636.3 393 78.6
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 1.5e-180 636.3 377 81.7
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 1.5e-180 636.3 390 79.5
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 7.4e-180 634.0 383 78.6
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 7.4e-180 634.0 411 75.2
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 1.3e-179 633.3 383 79.4
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 1.3e-179 633.3 380 80.0
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.3e-179 633.3 393 79.1
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 1.7e-179 632.9 384 79.2
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.7e-179 632.9 390 79.0
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 4.8e-179 631.3 384 78.9
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 4.8e-179 631.3 383 79.1
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 4.8e-179 631.3 419 75.9
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.1e-178 630.2 383 79.4
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 1.4e-178 629.8 384 78.4
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 1.4e-178 629.8 383 78.6
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 1.8e-178 629.4 383 78.6
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 3.1e-178 628.6 383 79.4
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 4.1e-178 628.2 393 77.1
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 4.1e-178 628.2 383 79.1
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 5.3e-178 627.9 393 78.1
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 9.1e-178 627.1 383 79.1
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 2.0e-177 625.9 380 80.0
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 2.0e-177 625.9 383 78.9
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 2.0e-177 625.9 383 79.6
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 7.7e-177 624.0 393 77.4
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.0e-176 623.6 387 77.3
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 1.0e-176 623.6 388 78.4
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 1.3e-176 623.2 384 77.3
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 2.2e-176 622.5 393 76.6
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 2.2e-176 622.5 390 77.7
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 2.9e-176 622.1 391 77.2
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 3.8e-176 621.7 383 76.8
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 5.0e-176 621.3 383 76.5
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 8.5e-176 620.5 383 78.3
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 1.1e-175 620.2 393 76.8
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 1.5e-175 619.8 393 76.1
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 1.9e-175 619.4 383 76.2
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 2.5e-175 619.0 383 77.8
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 4.2e-175 618.2 392 76.0
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 5.5e-175 617.8 393 75.6
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 1.2e-174 616.7 385 77.9
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.6e-174 616.3 383 77.0
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 2.1e-174 615.9 393 75.3
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 3.6e-174 615.1 391 76.5
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 4.7e-174 614.8 393 74.6
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 1.4e-173 613.2 391 75.7
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.4e-173 613.2 393 75.6
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 2.3e-173 612.5 384 76.6
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 3.0e-173 612.1 391 75.7
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 3.0e-173 612.1 391 75.7
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 4.0e-173 611.7 393 75.1
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 4.0e-173 611.7 391 77.2
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 4.0e-173 611.7 393 75.1
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 5.2e-173 611.3 436 70.0
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 6.8e-173 610.9 393 74.8
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 8.8e-173 610.5 391 75.4
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 8.8e-173 610.5 393 75.3
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 8.8e-173 610.5 393 75.6
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 1.5e-172 609.8 393 74.8
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 4.4e-172 608.2 393 75.1
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 5.7e-172 607.8 393 74.8
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 5.7e-172 607.8 393 74.6
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 5.7e-172 607.8 393 74.8
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 5.7e-172 607.8 393 74.6
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 1.3e-171 606.7 390 74.6
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 1.3e-171 606.7 391 75.4
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 1.3e-171 606.7 384 75.5
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 2.8e-171 605.5 383 76.2
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 6.3e-171 604.4 393 74.0
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.1e-170 603.6 366 79.8
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 4.1e-170 601.7 395 75.2
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 7.0e-170 600.9 393 75.6
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 5.0e-168 594.7 386 74.4
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 2.5e-167 592.4 386 73.8
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 4.7e-166 588.2 393 73.5
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 5.2e-165 584.7 390 75.4
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 1.5e-164 583.2 393 72.0
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.4e-162 576.6 341 80.9
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.8e-162 576.2 367 77.7
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 9.1e-162 573.9 346 81.2
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 2.7e-161 572.4 348 79.0
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.0e-160 570.5 390 71.3
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 2.3e-160 569.3 383 69.7
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 6.6e-160 567.8 388 70.6
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 1.9e-159 566.2 394 69.8
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 4.2e-159 565.1 393 70.0
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 1.6e-158 563.1 341 78.9
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 2.8e-158 562.4 375 73.1
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 3.6e-158 562.0 338 81.7
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 4.7e-158 561.6 394 69.5
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 1.5e-156 556.6 346 78.6
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 2.6e-156 555.8 389 71.7
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 2.8e-155 552.4 361 75.3
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 6.6e-152 541.2 369 73.2
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 8.6e-152 540.8 380 67.4
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.9e-151 539.7 393 65.1
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 1.6e-150 536.6 347 76.7
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.6e-150 536.6 331 77.6
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 2.1e-150 536.2 353 74.2
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.5e-143 513.5 401 67.6
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 3.3e-143 512.3 390 66.4
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 2.8e-134 482.6 314 74.8
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 1.5e-132 476.9 346 69.7
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 5.1e-120 435.3 327 63.6
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 8.7e-120 434.5 256 83.6
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 1.9e-119 433.3 372 55.4
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 2.0e-116 423.3 377 54.4
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 6.4e-115 418.3 379 56.7
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 4.2e-114 415.6 256 78.5
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 9.3e-114 414.5 258 77.1
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 3.9e-112 409.1 256 78.1
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 1.0e-104 384.4 288 67.0
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 3.0e-104 382.9 346 58.4
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.2e-99 366.7 223 78.5
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 4.8e-94 349.0 223 76.2
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 2.6e-92 343.2 359 45.4
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 4.6e-89 332.4 209 74.6
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 3.7e-86 322.8 221 71.5
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 2.8e-78 296.6 184 78.8
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 7.0e-69 265.4 184 70.7
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.5e-68 262.7 257 51.4
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 1.0e-67 261.5 177 69.5
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 4.8e-62 242.7 160 73.1
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 2.5e-58 230.3 376 35.6
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 3.0e-56 223.4 337 36.5
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 2.6e-55 220.3 218 56.4
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 6.5e-51 205.7 124 79.8
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 2.3e-43 180.6 124 71.8
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 1.1e-37 161.8 96 78.1
arahy.Tifrunner.gnm1.ann1.Y88CQU Arachis hypogaea HOM05D003696 ORTHO05D005158 3.9e-35 153.3 140 58.6
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 9.8e-31 138.7 152 50.0
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 7.8e-20 102.4 59 69.5
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 7.8e-20 102.4 59 69.5
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 5.1e-19 99.8 59 69.5
C04p68090 Brassica napus HOM05D025610 ORTHO05D016804 1.1e-16 92.0 109 45.0
BolC4t28314H Brassica oleracea HOM05D025610 ORTHO05D016804 1.1e-16 92.0 109 45.0
C04p68070 Brassica napus HOM05D003696 ORTHO05D016804 1.5e-15 88.2 67 64.2
BolC4t28312H Brassica oleracea HOM05D003696 ORTHO05D016804 1.5e-15 88.2 67 64.2
HanXRQChr04g0098101 Helianthus annuus HOM05D003696 ORTHO05D005158 4.1e-13 80.1 42 92.9
BraA04t18521Z Brassica rapa HOM05D000956 ORTHO05D016804 1.1e-10 72.0 50 64.0
BcaC02g07333 Brassica carinata HOM05D001127 ORTHO05D016804 1.5e-10 71.6 50 64.0
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 9.6e-10 68.9 34 82.4
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 1.2e-09 68.6 34 79.4
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 3.6e-09 67.0 33 87.9
A06p28820 Brassica napus HOM05D003696 ORTHO05D016804 6.9e-08 62.8 44 61.4
BraA06t25826Z Brassica rapa HOM05D003696 ORTHO05D016804 6.9e-08 62.8 44 61.4
arahy.Tifrunner.gnm1.ann1.ER9TT4 Arachis hypogaea HOM05D038369 ORTHO05D010597 7.6e-07 59.3 51 56.9
Pp3c12_11340 Physcomitrium patens HOM05D002538 ORTHO05D003162 1.3e-06 58.5 218 25.7
Atru.chr10.1782 Acer truncatum HOM05D002538 ORTHO05D003162 1.7e-06 58.2 273 24.5
HanXRQChr09g0243441 Helianthus annuus HOM05D003696 ORTHO05D005158 1.7e-06 58.2 134 34.3
Peaxi162Scf00099g00079 Petunia axillaris HOM05D002538 ORTHO05D003162 4.9e-06 56.6 247 23.9
DCAR_024895 Daucus carota HOM05D002538 ORTHO05D003162 6.4e-06 56.2 169 30.2
Gohir.D10G028700 Gossypium hirsutum HOM05D002538 ORTHO05D003162 6.4e-06 56.2 287 25.1
Gorai.011G030500 Gossypium raimondii HOM05D002538 ORTHO05D003162 8.4e-06 55.8 287 25.1
THA.LOC104798407 Tarenaya hassleriana HOM05D002538 ORTHO05D003162 8.4e-06 55.8 298 25.2


User provided reference genes

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