Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 9.5e-211 736.5 348 100.0
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.8e-161 572.8 365 80.0
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.3e-154 550.1 383 74.4
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 5.9e-152 541.2 353 78.5
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 6.5e-151 537.7 352 78.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 6.5e-151 537.7 352 78.1
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.4e-124 450.3 295 76.9
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 2.7e-117 426.0 355 63.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.1e-113 412.5 358 63.4
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.1e-113 412.1 367 60.5
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 7.3e-110 401.4 368 59.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 7.3e-110 401.4 399 58.4
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 8.0e-109 397.9 370 59.2
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.2e-108 395.2 359 61.0
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 9.8e-107 391.0 367 58.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.3e-106 390.6 405 55.1
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.1e-105 387.5 371 59.0
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 9.2e-105 384.4 352 61.6
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.3e-103 379.8 349 58.7
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 8.6e-103 377.9 363 57.0
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 5.6e-102 375.2 379 57.0
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.8e-101 372.9 353 58.1
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 4.7e-101 372.1 371 57.4
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.8e-100 370.2 370 56.5
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 5.2e-100 368.6 361 57.1
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 3.4e-99 365.9 381 55.4
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 5.8e-99 365.2 369 56.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.9e-98 362.8 374 55.9
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 6.4e-98 361.7 298 64.8
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 5.4e-97 358.6 300 61.7
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 3.5e-96 355.9 301 60.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.6e-96 355.5 357 57.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.0e-95 354.4 410 52.2
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.3e-95 353.2 361 56.2
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.9e-95 352.4 361 54.3
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 6.6e-95 351.7 357 58.0
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.8e-93 346.3 349 57.9
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.8e-93 346.3 312 62.2
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 4.7e-93 345.5 368 54.6
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.6e-91 339.7 348 53.7
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 1.3e-90 337.4 303 59.4
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.2e-90 336.7 511 43.2
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 6.4e-90 335.1 329 55.3
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.9e-89 333.6 383 52.7
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 4.6e-88 328.9 355 56.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 7.8e-88 328.2 383 52.5
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.3e-87 327.4 390 55.4
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.3e-87 327.4 364 53.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 3.9e-87 325.9 355 54.4
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 5.1e-87 325.5 296 57.1
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 6.6e-87 325.1 353 54.1
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.5e-86 323.2 383 51.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 5.6e-86 322.0 397 49.4
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 5.6e-86 322.0 364 50.8
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 2.1e-85 320.1 293 58.7
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.3e-84 316.6 348 52.0
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 5.2e-84 315.5 298 56.4
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.5e-83 313.9 370 51.1
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.3e-82 310.8 327 54.4
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 4.9e-82 308.9 379 49.9
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.6e-80 303.9 351 51.0
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.6e-80 303.9 332 55.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.3e-79 300.8 360 51.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.0e-79 299.7 384 50.8
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.9e-79 299.3 380 49.7
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 3.9e-79 299.3 300 55.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 6.6e-79 298.5 358 52.2
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.5e-78 297.4 399 48.1
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.9e-78 297.0 303 54.5
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.1e-77 293.5 351 50.4
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 6.8e-76 288.5 444 42.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 5.8e-75 285.4 430 43.3
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 9.9e-75 284.6 315 53.0
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.3e-74 284.3 301 52.2
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.4e-74 281.6 298 54.4
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 7.1e-73 278.5 372 48.9
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.9e-71 272.7 298 51.7
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 2.0e-67 260.4 301 51.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 5.4e-65 252.3 360 46.9
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 7.1e-65 251.9 361 48.2
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 6.0e-64 248.8 224 58.5
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 7.9e-64 248.4 448 40.4
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.3e-63 247.7 276 49.6
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 3.9e-63 246.1 367 46.6
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.9e-62 243.8 358 47.2
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.3e-61 241.1 297 48.5
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.8e-61 239.2 447 39.6
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 8.1e-61 238.4 380 46.6
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 8.1e-61 238.4 346 47.4
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 9.9e-59 231.5 381 46.2
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.3e-58 231.1 333 43.5
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.9e-57 227.3 370 44.6
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.7e-56 223.4 376 45.2
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 3.9e-55 219.5 390 44.6
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 8.7e-55 218.4 376 44.4
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.1e-54 218.0 375 45.9
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.0e-52 209.5 215 59.5
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 6.9e-52 208.8 231 53.7
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 7.1e-49 198.7 359 45.4
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 7.9e-48 195.3 443 35.9
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 3.0e-47 193.4 309 45.6
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 3.0e-47 193.4 375 44.0
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.5e-46 190.3 351 44.4
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 9.6e-46 188.3 182 56.6
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.6e-45 187.6 347 42.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 6.3e-45 185.7 350 44.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 1.0e-42 178.3 196 46.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.7e-40 170.2 293 40.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.5e-38 163.7 236 46.6
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 4.3e-38 162.9 314 39.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 4.3e-38 162.9 401 38.2
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 9.7e-38 161.8 348 37.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 6.3e-37 159.1 376 39.1
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 6.3e-37 159.1 376 39.1
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.2e-34 150.6 297 41.4
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-33 148.3 339 40.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.3e-31 140.6 321 38.6
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 3.3e-30 136.7 393 35.9
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 9.7e-30 135.2 286 38.8
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.2e-29 134.0 298 38.6
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.3e-28 129.4 379 36.7
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 4.2e-25 119.8 372 34.9
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.2e-25 119.8 291 35.7
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 3.3e-22 110.2 308 35.7
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 2.6e-19 100.5 312 32.7
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 1.1e-17 95.1 318 32.4
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 4.1e-12 76.6 58 70.7
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 9.1e-12 75.5 72 63.9
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 9.1e-12 75.5 162 37.0
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 2.7e-11 73.9 105 44.8
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 5.9e-11 72.8 66 66.7
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 2.5e-09 67.4 222 32.4
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.2e-08 65.1 37 67.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.8e-07 59.3 38 65.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-06 57.8 38 63.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-06 57.8 38 63.2
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-06 57.8 38 63.2
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.0e-06 57.8 38 63.2
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.0e-06 57.8 38 63.2
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 3.4e-06 57.0 40 62.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 4.4e-06 56.6 35 65.7
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 4.4e-06 56.6 59 55.9
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.4e-06 56.6 29 75.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 5.7e-06 56.2 39 59.0
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 7.5e-06 55.8 36 63.9
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.5e-06 55.8 37 62.2
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 7.5e-06 55.8 29 75.9
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 7.5e-06 55.8 38 60.5
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 7.5e-06 55.8 38 63.2
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 7.5e-06 55.8 29 72.4
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 9.8e-06 55.5 39 61.5
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 9.8e-06 55.5 65 46.2
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 9.8e-06 55.5 39 64.1
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 9.8e-06 55.5 29 72.4
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 9.8e-06 55.5 36 66.7


User provided reference genes

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