Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G148.2 Capsicum annuum HOM05D003623 ORTHO05D004335 6.4e-82 307.4 157 100.0
CAN.G624.10 Capsicum annuum HOM05D003623 ORTHO05D004335 9.8e-22 107.5 65 78.5
CAN.G2073.2 Capsicum annuum HOM05D003623 ORTHO05D004335 3.7e-21 105.5 64 78.1
ClCG03G011450 Citrullus lanatus HOM05D003623 ORTHO05D004335 1.1e-20 104.0 76 65.8
CAN.G2073.3 Capsicum annuum HOM05D003623 ORTHO05D004335 1.4e-20 103.6 65 75.4
Peaxi162Scf00286g00829 Petunia axillaris HOM05D003623 ORTHO05D004335 1.4e-20 103.6 65 75.4
Sopen09g035770 Solanum pennellii HOM05D003623 ORTHO05D004335 1.4e-20 103.6 65 76.9
FAN02G2773 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.8e-20 103.2 86 61.6
MD12G1253100 Malus domestica HOM05D003623 ORTHO05D004335 1.8e-20 103.2 65 75.4
Sed0012930 Sechium edule HOM05D003623 ORTHO05D004335 1.8e-20 103.2 76 64.5
MELO3C010102.2 Cucumis melo HOM05D003623 ORTHO05D004335 2.4e-20 102.8 76 64.5
CsaV3_1G045020 Cucumis sativus L. HOM05D003623 ORTHO05D004335 2.4e-20 102.8 76 64.5
FvH4_6g01310 Fragaria vesca HOM05D003623 ORTHO05D004335 2.4e-20 102.8 76 65.8
Glyma.10G168700 Glycine max HOM05D003623 ORTHO05D004335 2.4e-20 102.8 76 64.5
Nitab4.5_0000309g0320 Nicotiana tabacum HOM05D003623 ORTHO05D004335 3.1e-20 102.4 65 73.8
DCAR_026670 Daucus carota HOM05D003623 ORTHO05D004335 4.1e-20 102.1 65 75.4
MD04G1235300 Malus domestica HOM05D003623 ORTHO05D004335 4.1e-20 102.1 65 73.8
Cpa.g.sc51.46 Carica papaya HOM05D003623 ORTHO05D004335 5.4e-20 101.7 65 73.8
Manes.09G145400 Manihot esculenta HOM05D003623 ORTHO05D004335 5.4e-20 101.7 79 62.0
TWI34G1961 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 5.4e-20 101.7 65 75.4
TWI60G1592 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 5.4e-20 101.7 65 75.4
Phvul.L002532 Phaseolus vulgaris HOM05D003623 ORTHO05D004335 7.0e-20 101.3 76 63.2
Potri.013G051400 Populus trichocarpa HOM05D003623 ORTHO05D004335 7.0e-20 101.3 65 72.3
Potri.019G025600 Populus trichocarpa HOM05D003623 ORTHO05D004335 7.0e-20 101.3 65 72.3
Sabra13G0046700 Salix brachista HOM05D003623 ORTHO05D004335 7.0e-20 101.3 65 72.3
GSVIVG01026359001 Vitis vinifera HOM05D003623 ORTHO05D004335 7.0e-20 101.3 76 63.2
Duzib128G0757 Durio zibethinus HOM05D003623 ORTHO05D004335 9.1e-20 100.9 65 73.8
Manes.08G142800 Manihot esculenta HOM05D003623 ORTHO05D004335 9.1e-20 100.9 76 63.2
Nitab4.5_0002260g0250 Nicotiana tabacum HOM05D003623 ORTHO05D004335 9.1e-20 100.9 65 72.3
Nitab4.5_0003358g0040 Nicotiana tabacum HOM05D003623 ORTHO05D004335 9.1e-20 100.9 65 72.3
QL03p033428 Quercus lobata HOM05D003623 ORTHO05D004335 9.1e-20 100.9 82 61.0
CANSAT54G1818 Cannabis sativa HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
Prupe.6G355200 Prunus persica HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
Solyc05g053835.2 Solanum lycopersicum HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
Solyc09g097830.4 Solanum lycopersicum HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 75.4
Sopen05g032310 Solanum pennellii HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
PGSC0003DMG400015752 Solanum tuberosum HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
VMungo0720G0796 Vigna mungo HOM05D003623 ORTHO05D004335 1.2e-19 100.5 65 72.3
FAN05G1824 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.6e-19 100.1 86 60.5
FAN05G2056 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.6e-19 100.1 86 60.5
Lj5g0011380 Lotus japonicus HOM05D003623 ORTHO05D004335 1.6e-19 100.1 76 63.2
COL.COLO4_35966 Corchorus olitorius HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
Gohir.A10G130700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
Gohir.A11G243000 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
Gohir.D10G135700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
Gorai.011G150500 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
Gorai.013G189100 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.0e-19 99.8 65 72.3
RcHm_v2.0_Chr3g0448861 Rosa chinensis HOM05D003623 ORTHO05D004335 2.0e-19 99.8 86 60.5
Gohir.D13G171700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.7e-19 99.4 65 72.3
Manes.08G146600 Manihot esculenta HOM05D003623 ORTHO05D004335 2.7e-19 99.4 76 61.8
Sabra19G0035000 Salix brachista HOM05D003623 ORTHO05D004335 2.7e-19 99.4 65 72.3
Thecc.04G190700 Theobroma cacao HOM05D003623 ORTHO05D004335 2.7e-19 99.4 65 72.3
CANSAT78G1699 Cannabis sativa HOM05D003623 ORTHO05D004335 3.5e-19 99.0 65 70.8
Cfa008669 Carpinus fangiana HOM05D003623 ORTHO05D004335 3.5e-19 99.0 65 72.3
Ca_09980_v3 Cicer arietinum L. HOM05D003623 ORTHO05D004335 3.5e-19 99.0 86 57.0
Duzib177G0921 Durio zibethinus HOM05D003623 ORTHO05D004335 3.5e-19 99.0 65 70.8
Medtr1g079510 Medicago truncatula HOM05D003623 ORTHO05D004335 3.5e-19 99.0 76 60.5
Psat6g140680 Pisum sativum HOM05D003623 ORTHO05D004335 3.5e-19 99.0 76 60.5
Thecc.05G264600 Theobroma cacao HOM05D003623 ORTHO05D004335 3.5e-19 99.0 65 70.8
TPR.G31601 Trifolium pratense HOM05D003623 ORTHO05D004335 3.5e-19 99.0 76 60.5
Atru.chr2.1140 Acer truncatum HOM05D003623 ORTHO05D004335 4.5e-19 98.6 86 59.3
arahy.Tifrunner.gnm1.ann1.3CZ4H2 Arachis hypogaea HOM05D003623 ORTHO05D004335 4.5e-19 98.6 76 61.8
arahy.Tifrunner.gnm1.ann1.97NMUU Arachis hypogaea HOM05D003623 ORTHO05D004335 4.5e-19 98.6 76 61.8
Dinv10856 Davidia involucrata HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 70.8
Eucgr.L00641 Eucalyptus grandis HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 70.8
QL06p027597 Quercus lobata HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 72.3
Sabra19G0038000 Salix brachista HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 70.8
Sabra19G0038200 Salix brachista HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 70.8
TAR362G0319 Trochodendron aralioides HOM05D003623 ORTHO05D004335 4.5e-19 98.6 65 70.8
CiPaw.01G112500 Carya illinoinensis HOM05D003623 ORTHO05D004335 5.9e-19 98.2 74 64.9
Glyma.20G221000 Glycine max HOM05D003623 ORTHO05D004335 5.9e-19 98.2 76 60.5
Gohir.A13G162400 Gossypium hirsutum HOM05D003623 ORTHO05D004335 5.9e-19 98.2 65 70.8
Lalb_Chr21g0311321 Lupinus albus HOM05D003623 ORTHO05D004335 5.9e-19 98.2 76 60.5
TWI34G1660 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 5.9e-19 98.2 65 72.3
TAR633G0333 Trochodendron aralioides HOM05D003623 ORTHO05D004335 5.9e-19 98.2 65 72.3
Aqoxy2G03998 Aquilegia oxysepala HOM05D003623 ORTHO05D004335 7.7e-19 97.8 65 70.8
Aa31LG2G2050 Aethionema arabicum HOM05D003623 ORTHO05D004335 1.0e-18 97.4 65 72.3
Duzib268G0561 Durio zibethinus HOM05D003623 ORTHO05D004335 1.0e-18 97.4 63 71.4
EL10Ac4g09791 Beta vulgaris HOM05D003623 ORTHO05D004335 1.3e-18 97.1 86 58.1
MBI07_g12178_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D004335 1.3e-18 97.1 76 61.8
PSO017G5742 Papaver somniferum HOM05D003623 ORTHO05D004335 1.3e-18 97.1 65 70.8
AL3G14190 Arabidopsis lyrata HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
MSTRG.4272 Avicennia marina HOM05D003623 ORTHO05D004335 1.7e-18 96.7 65 69.2
A01p40930 Brassica napus HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
BNapus_Darmor_BZH_scaffold_78p00780 Brassica napus HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
BraA01t04529Z Brassica rapa HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
CARHR078390 Cardamine hirsuta HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
Duzib151G0791 Durio zibethinus HOM05D003623 ORTHO05D004335 1.7e-18 96.7 65 70.8
Thhalv10019996m.g Eutrema salsugineum HOM05D003623 ORTHO05D004335 1.7e-18 96.7 75 62.7
Hma1.2p1_0984F.1_g244260 Hydrangea macrophylla HOM05D003623 ORTHO05D004335 1.7e-18 96.7 88 58.0
Peaxi162Scf00423g00724 Petunia axillaris HOM05D003623 ORTHO05D004335 1.7e-18 96.7 74 63.5
SalBow2G2507 Salvia bowleyana HOM05D003623 ORTHO05D004335 1.7e-18 96.7 65 70.8
Sc16g0010040 Simmondsia chinensis HOM05D003623 ORTHO05D004335 1.7e-18 96.7 86 58.1
CSS0034552 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 2.3e-18 96.3 74 62.2
Ciclev10018711m.g Citrus clementina HOM05D003623 ORTHO05D004335 2.3e-18 96.3 76 60.5
Gohir.D11G252600 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.3e-18 96.3 62 72.6
Gorai.007G271100 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.3e-18 96.3 62 72.6
PSO675G4779 Papaver somniferum HOM05D003623 ORTHO05D004335 2.3e-18 96.3 65 70.8
THA.LOC104821603 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 2.3e-18 96.3 65 70.8
MSTRG.9774 Avicennia marina HOM05D003623 ORTHO05D004335 2.9e-18 95.9 65 69.2
BolC1t05759H Brassica oleracea HOM05D003623 ORTHO05D004335 2.9e-18 95.9 75 61.3
CSS0050373 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 2.9e-18 95.9 83 57.8
CAN.G1310.13 Capsicum annuum HOM05D003623 ORTHO05D004335 2.9e-18 95.9 65 67.7
AUR62018537 Chenopodium quinoa HOM05D003623 ORTHO05D004335 2.9e-18 95.9 65 69.2
AT3G04240 Arabidopsis thaliana HOM05D003623 ORTHO05D004335 3.8e-18 95.5 75 62.7
Carub.0003s0346 Capsella rubella HOM05D003623 ORTHO05D004335 3.8e-18 95.5 75 61.3
CDE05G1163 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 3.8e-18 95.5 64 68.8
Cc03_g09530 Coffea canephora HOM05D003623 ORTHO05D004335 3.8e-18 95.5 65 69.2
Nn8g41257 Nelumbo nucifera HOM05D003623 ORTHO05D004335 3.8e-18 95.5 76 60.5
unitig_37.g12000 Utricularia gibba HOM05D003623 ORTHO05D004335 3.8e-18 95.5 65 67.7
Aa31LG5G14720 Aethionema arabicum HOM05D003623 ORTHO05D004335 5.0e-18 95.1 75 61.3
CDE05G0087 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 5.0e-18 95.1 64 68.8
Oeu002933.1 Olea europaea HOM05D003623 ORTHO05D004335 5.0e-18 95.1 65 69.2
THA.LOC104820750 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 6.5e-18 94.7 75 61.3
Actinidia20848 Actinidia chinensis HOM05D003623 ORTHO05D004335 8.6e-18 94.4 65 69.2
EL10Ac3g07439 Beta vulgaris HOM05D003623 ORTHO05D004335 8.6e-18 94.4 65 67.7
AUR62006999 Chenopodium quinoa HOM05D003623 ORTHO05D004335 8.6e-18 94.4 86 54.7
Migut.G00821 Erythranthe guttata HOM05D003623 ORTHO05D004335 8.6e-18 94.4 65 69.2
Migut.G01152 Erythranthe guttata HOM05D003623 ORTHO05D004335 8.6e-18 94.4 65 69.2
HanXRQChr01g0021981 Helianthus annuus HOM05D003623 ORTHO05D004335 1.1e-17 94.0 65 67.7
Sp3g03150 Schrenkiella parvula HOM05D003623 ORTHO05D004335 1.1e-17 94.0 75 60.0
Ah.13g077780 Amaranthus hybridus HOM05D003623 ORTHO05D004335 1.5e-17 93.6 65 66.2
HanXRQChr14g0436771 Helianthus annuus HOM05D003623 ORTHO05D004335 1.5e-17 93.6 65 67.7
Rhsim04G0132100 Rhododendron simsii HOM05D003623 ORTHO05D004335 1.5e-17 93.6 65 70.8
Lsat_1_v5_gn_2_49120 Lactuca sativa HOM05D003623 ORTHO05D004335 1.9e-17 93.2 65 67.7
Hund07163 Selenicereus undatus HOM05D003623 ORTHO05D004335 1.9e-17 93.2 76 59.2
HPP92_006960 Vanilla planifolia HOM05D003623 ORTHO05D004335 1.9e-17 93.2 64 68.8
AUR62020880 Chenopodium quinoa HOM05D003623 ORTHO05D004335 2.5e-17 92.8 65 67.7
ECA238G2410 Erigeron canadensis HOM05D003623 ORTHO05D004335 4.2e-17 92.0 65 66.2
HPP92_000441 Vanilla planifolia HOM05D003623 ORTHO05D004335 4.2e-17 92.0 68 64.7
Zm00001eb241190 Zea mays HOM05D003623 ORTHO05D004335 4.2e-17 92.0 62 66.1
Actinidia35820 Actinidia chinensis HOM05D003623 ORTHO05D004335 5.5e-17 91.7 65 66.2
FAN09G2957 Fragaria x ananassa HOM05D003623 ORTHO05D004335 5.5e-17 91.7 105 50.5
arahy.Tifrunner.gnm1.ann1.B933NQ Arachis hypogaea HOM05D003623 ORTHO05D004335 9.5e-17 90.9 76 56.6
SEGI_12158 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 1.6e-16 90.1 62 64.5
HanXRQChr09g0260781 Helianthus annuus HOM05D003623 ORTHO05D004335 2.1e-16 89.7 65 64.6
Hund19026 Selenicereus undatus HOM05D003623 ORTHO05D004335 2.1e-16 89.7 65 66.2
ATR0561G246 Amborella trichopoda HOM05D003623 ORTHO05D004335 4.7e-16 88.6 65 63.1
arahy.Tifrunner.gnm1.ann1.KMGM6D Arachis hypogaea HOM05D003623 ORTHO05D004335 4.7e-16 88.6 86 53.5
SEGI_29220 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 1.0e-15 87.4 62 64.5
Pp3c6_13940 Physcomitrium patens HOM05D003623 ORTHO05D004335 1.8e-15 86.7 75 56.0
Mapoly0034s0037 Marchantia polymorpha HOM05D003623 ORTHO05D004335 3.0e-15 85.9 62 64.5
Pp3c5_10370 Physcomitrium patens HOM05D003623 ORTHO05D004335 8.9e-15 84.3 93 47.3
SMO347G0623 Selaginella moellendorffii HOM05D003623 ORTHO05D004335 2.0e-14 83.2 66 59.1
PRCOL_00000371 Prasinoderma coloniale HOM05D003623 ORTHO05D004335 1.3e-13 80.5 65 55.4
Dinv32173 Davidia involucrata HOM05D003623 ORTHO05D004335 1.1e-12 77.4 51 68.6
CBR_g46307 Chara braunii HOM05D003623 ORTHO05D004335 3.1e-12 75.9 62 59.7
arahy.Tifrunner.gnm1.ann1.LG1RTX Arachis hypogaea HOM05D003623 ORTHO05D004335 4.1e-12 75.5 76 51.3
Haze_11688 Corylus avellana HOM05D003623 ORTHO05D004335 7.0e-12 74.7 119 40.3
MELO3C005185.2 Cucumis melo HOM05D003623 ORTHO05D004335 3.5e-11 72.4 47 68.1
COL.COLO4_38176 Corchorus olitorius HOM05D003623 ORTHO05D004335 2.3e-10 69.7 51 66.7
arahy.Tifrunner.gnm1.ann1.XW6TTL Arachis hypogaea HOM05D003623 ORTHO05D004335 3.8e-10 68.9 76 48.7
vmacro00425 Vaccinium macrocarpon HOM05D003623 ORTHO05D004335 3.8e-10 68.9 45 71.1
Sc13g0000570 Simmondsia chinensis HOM05D003623 ORTHO05D004335 2.5e-09 66.2 45 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2298 Anthoceros agrestis HOM05D003623 ORTHO05D004335 3.3e-09 65.9 46 63.0
Sc13g0000520 Simmondsia chinensis HOM05D003623 ORTHO05D004335 8.0e-08 61.2 49 59.2
CAN.G301.4 Capsicum annuum HOM05D024055 ORTHO05D115571 2.6e-06 56.2 29 93.1
CAN.G683.3 Capsicum annuum HOM05D024055 ORTHO05D005042 4.4e-06 55.5 31 87.1
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 5.8e-06 55.1 31 87.1


User provided reference genes

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