Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.8e-104 380.9 198 100.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 5.6e-91 337.8 198 88.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.4e-89 332.4 198 86.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.1e-74 282.7 195 76.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.1e-74 282.7 182 79.7
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.0e-72 276.2 182 78.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.2e-71 272.7 199 72.9
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.6e-69 266.5 204 71.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.6e-69 266.5 195 72.8
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.1e-67 260.4 193 72.5
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.3e-67 258.5 184 74.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.6e-67 257.3 171 80.1
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-66 256.5 187 70.6
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.6e-66 256.5 193 72.5
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.1e-66 256.1 200 68.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 3.7e-66 255.4 193 69.9
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.7e-66 255.4 177 74.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.8e-66 255.0 207 66.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 4.8e-66 255.0 201 65.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.2e-66 254.6 207 66.7
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-65 253.8 180 73.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.1e-65 253.8 180 73.3
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.4e-65 253.4 197 69.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-65 253.4 180 73.3
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.8e-65 253.1 201 68.7
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.8e-65 253.1 205 68.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.1e-65 252.3 197 68.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 3.1e-65 252.3 196 69.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.1e-65 252.3 201 65.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.0e-65 251.9 178 71.9
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.0e-65 251.9 178 71.9
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 4.0e-65 251.9 180 73.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.0e-65 251.9 204 66.2
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 5.3e-65 251.5 201 65.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 6.9e-65 251.1 205 65.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 6.9e-65 251.1 180 72.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.9e-65 251.1 176 72.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 9.0e-65 250.8 187 70.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 9.0e-65 250.8 196 70.4
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.2e-64 250.4 201 65.2
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-64 250.4 193 68.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.5e-64 250.0 176 72.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-64 250.0 179 69.8
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.5e-64 250.0 199 68.8
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 2.0e-64 249.6 199 66.8
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.0e-64 249.6 197 66.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.6e-64 249.2 200 65.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.6e-64 249.2 201 64.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.6e-64 249.2 193 68.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 4.5e-64 248.4 174 73.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.5e-64 248.4 177 73.4
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.5e-64 248.4 181 68.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 5.8e-64 248.1 200 67.0
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 7.6e-64 247.7 178 71.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 7.6e-64 247.7 192 67.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.0e-63 247.3 198 64.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.3e-63 246.9 194 67.0
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.3e-63 246.9 193 66.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.7e-63 246.5 184 64.7
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.2e-63 246.1 178 71.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.2e-63 246.1 176 71.6
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 2.2e-63 246.1 209 63.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.9e-63 245.7 177 71.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.9e-63 245.0 196 67.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.9e-63 245.0 177 71.2
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.4e-63 244.2 189 67.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-62 243.4 195 67.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.4e-62 243.4 190 67.9
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.9e-62 243.0 189 67.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.5e-62 242.7 195 65.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.5e-62 242.7 195 65.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.5e-62 242.7 197 66.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.5e-62 242.7 193 66.8
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.5e-62 242.7 176 66.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 4.2e-62 241.9 201 63.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.2e-62 241.9 190 67.4
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.5e-62 241.5 196 64.8
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.5e-62 241.5 183 67.2
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 7.1e-62 241.1 200 65.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.3e-62 240.7 194 67.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.2e-61 240.4 207 62.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.6e-61 240.0 190 67.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.6e-61 240.0 190 67.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.1e-61 239.6 175 67.4
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.1e-61 239.6 188 66.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.7e-61 239.2 194 66.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.5e-61 238.8 199 64.3
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.5e-61 238.8 177 70.1
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 4.6e-61 238.4 189 63.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 6.0e-61 238.0 188 66.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.3e-60 236.9 186 66.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-60 236.5 201 64.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.8e-60 236.5 178 68.0
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.8e-60 236.5 190 63.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.3e-60 236.1 190 68.4
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.0e-60 235.7 183 66.7
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.0e-60 235.7 190 66.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.9e-60 235.3 178 65.2
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.1e-60 235.0 169 70.4
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.1e-60 235.0 163 74.2
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 8.7e-60 234.2 197 64.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 8.7e-60 234.2 190 65.8
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-59 233.8 199 63.8
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.1e-59 233.8 179 67.6
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.9e-59 233.0 178 66.9
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.5e-59 232.6 192 66.1
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.7e-59 231.5 174 67.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.6e-59 230.7 157 75.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.1e-58 229.6 174 66.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.8e-58 229.2 196 64.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.8e-58 228.4 192 64.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.3e-58 228.0 196 63.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.1e-57 225.7 205 59.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.0e-56 223.0 175 65.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.0e-55 218.4 286 47.2
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 6.5e-55 218.0 149 70.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.9e-54 216.5 158 69.6
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.5e-54 216.1 191 62.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.2e-53 213.8 203 59.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.1e-53 211.5 128 85.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.3e-51 205.3 178 60.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 6.9e-49 198.0 135 73.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.7e-48 194.5 170 67.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.2e-47 193.0 129 78.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.5e-47 191.0 194 56.7
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 5.1e-44 181.8 171 56.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.8e-41 173.3 122 72.1
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 6.9e-41 171.4 182 48.9
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.0e-40 169.9 120 69.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.6e-40 169.5 173 53.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.7e-39 166.8 196 52.6
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.2e-38 162.2 152 54.6
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 7.2e-38 161.4 203 48.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 9.4e-38 161.0 103 76.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 6.7e-36 154.8 109 75.2
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 6.7e-36 154.8 108 76.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.7e-35 151.8 154 49.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.8e-34 149.4 86 84.9
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.7e-32 141.4 195 46.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.5e-30 135.2 151 47.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.7e-29 132.9 101 67.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 5.2e-28 128.6 180 40.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.5e-22 110.5 172 41.3
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 5.2e-20 102.1 70 67.1
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.8e-18 96.3 70 64.3
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.7e-18 95.9 108 53.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.2e-16 90.9 57 71.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.7e-16 89.7 59 71.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-15 87.8 197 38.1
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 6.1e-13 78.6 198 30.3
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 8.0e-13 78.2 72 56.9
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.4e-12 77.4 152 32.2
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.4e-09 65.5 56 55.4
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-08 64.3 63 54.0
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.0e-08 63.5 40 80.0


User provided reference genes

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