Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1469.11 Capsicum annuum HOM05D005428 ORTHO05D006876 4.4e-155 551.2 271 100.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.7e-61 239.2 157 78.3
CAN.G220.27 Capsicum annuum HOM05D005428 ORTHO05D006876 1.6e-48 197.2 204 59.3
CAN.G1007.11 Capsicum annuum HOM05D005428 ORTHO05D006876 5.8e-38 162.2 123 74.0
CAN.G1181.27 Capsicum annuum HOM05D005428 ORTHO05D006876 6.4e-37 158.7 122 71.3
PGSC0003DMG400015115 Solanum tuberosum HOM05D005428 ORTHO05D006876 3.3e-33 146.4 123 67.5
Sopen09g032350 Solanum pennellii HOM05D005428 ORTHO05D006876 1.6e-32 144.1 116 69.8
Solyc09g083410.4 Solanum lycopersicum HOM05D005428 ORTHO05D006876 8.1e-32 141.7 96 80.2
Nitab4.5_0001418g0050 Nicotiana tabacum HOM05D005428 ORTHO05D006876 1.1e-31 141.4 116 69.0
Nitab4.5_0000525g0250 Nicotiana tabacum HOM05D005428 ORTHO05D006876 1.2e-30 137.9 116 67.2
Peaxi162Scf00813g00223 Petunia axillaris HOM05D005428 ORTHO05D006876 2.0e-30 137.1 116 65.5
Atru.BG.84.p Acer truncatum HOM05D005428 ORTHO05D006876 6.0e-27 125.6 116 61.2
SGA_v2.0_scaffold79G25631 Striga asiatica HOM05D005428 ORTHO05D006876 1.3e-26 124.4 198 43.4
Prupe.1G031400 Prunus persica HOM05D005428 ORTHO05D006876 1.7e-26 124.0 116 59.5
CANSAT78G2122 Cannabis sativa HOM05D005428 ORTHO05D006876 2.3e-26 123.6 96 69.8
SalBow3G1895 Salvia bowleyana HOM05D005428 ORTHO05D006876 3.0e-26 123.2 117 60.7
Thecc.04G246600 Theobroma cacao HOM05D005428 ORTHO05D006876 5.1e-26 122.5 112 61.6
Ciclev10004873m.g Citrus clementina HOM05D005428 ORTHO05D006876 6.6e-26 122.1 116 59.5
Duzib151G0442 Durio zibethinus HOM05D005428 ORTHO05D006876 6.6e-26 122.1 123 56.9
Lj5g0022725 Lotus japonicus HOM05D005428 ORTHO05D006876 6.6e-26 122.1 116 59.5
MBI11_g34854_MAGBIO Magnolia biondii HOM05D005428 ORTHO05D006876 8.6e-26 121.7 123 56.1
Medtr1g075320 Medicago truncatula HOM05D005428 ORTHO05D006876 8.6e-26 121.7 123 55.3
Actinidia40084 Actinidia chinensis HOM05D005428 ORTHO05D006876 1.1e-25 121.3 198 40.9
Psat6g125320 Pisum sativum HOM05D005428 ORTHO05D006876 1.1e-25 121.3 117 57.3
Lalb_Chr06g0169281 Lupinus albus HOM05D005428 ORTHO05D006876 1.5e-25 120.9 117 58.1
Manes.03G168500 Manihot esculenta HOM05D005428 ORTHO05D006876 1.5e-25 120.9 117 59.0
FvH4_4g02810 Fragaria vesca HOM05D005428 ORTHO05D006876 1.9e-25 120.6 198 39.4
FAN12G3785 Fragaria x ananassa HOM05D005428 ORTHO05D006876 1.9e-25 120.6 198 39.4
Nn1g02619 Nelumbo nucifera HOM05D005428 ORTHO05D006876 1.9e-25 120.6 116 57.8
TPR.G27197 Trifolium pratense HOM05D005428 ORTHO05D006876 1.9e-25 120.6 96 66.7
TWI09G0474 Tripterygium wilfordii HOM05D005428 ORTHO05D006876 1.9e-25 120.6 116 57.8
Lalb_Chr21g0312281 Lupinus albus HOM05D005428 ORTHO05D006876 2.5e-25 120.2 117 57.3
Aqoxy2G03568 Aquilegia oxysepala HOM05D005428 ORTHO05D006876 3.3e-25 119.8 163 46.0
MD13G1207900 Malus domestica HOM05D005428 ORTHO05D006876 3.3e-25 119.8 198 40.4
Oeu032589.1 Olea europaea HOM05D005428 ORTHO05D006876 3.3e-25 119.8 96 68.8
arahy.Tifrunner.gnm1.ann1.562L79 Arachis hypogaea HOM05D005428 ORTHO05D006876 4.3e-25 119.4 105 63.8
Rhsim04G0189900 Rhododendron simsii HOM05D005428 ORTHO05D006876 4.3e-25 119.4 116 58.6
VMungo0720G3093 Vigna mungo HOM05D005428 ORTHO05D006876 4.3e-25 119.4 117 56.4
Ciclev10007151m.g Citrus clementina HOM05D005428 ORTHO05D006876 5.6e-25 119.0 116 57.8
Ciclev10004875m.g Citrus clementina HOM05D005428 ORTHO05D006876 7.3e-25 118.6 116 56.9
Duzib212G0361 Durio zibethinus HOM05D005428 ORTHO05D006876 7.3e-25 118.6 123 55.3
Glyma.20G205500 Glycine max HOM05D005428 ORTHO05D006876 7.3e-25 118.6 116 56.9
Lj6A657G48 Lonicera japonica HOM05D005428 ORTHO05D006876 7.3e-25 118.6 116 57.8
CSS0003291 Camellia sinensis var. sinensis HOM05D005428 ORTHO05D006876 9.5e-25 118.2 116 58.6
CSS0012294 Camellia sinensis var. sinensis HOM05D005428 ORTHO05D006876 9.5e-25 118.2 116 58.6
Phvul.007G125750 Phaseolus vulgaris HOM05D005428 ORTHO05D006876 9.5e-25 118.2 116 56.9
arahy.Tifrunner.gnm1.ann1.WBEP1R Arachis hypogaea HOM05D005428 ORTHO05D006876 1.2e-24 117.9 97 66.0
Migut.N00242 Erythranthe guttata HOM05D005428 ORTHO05D006876 1.2e-24 117.9 116 59.5
Cpa.g.sc58.52 Carica papaya HOM05D005428 ORTHO05D006876 1.6e-24 117.5 123 55.3
Dinv29906 Davidia involucrata HOM05D005428 ORTHO05D006876 1.6e-24 117.5 116 57.8
Gohir.A09G057600 Gossypium hirsutum HOM05D005428 ORTHO05D006876 1.6e-24 117.5 194 38.1
Potri.010G076100 Populus trichocarpa HOM05D005428 ORTHO05D006876 1.6e-24 117.5 116 56.0
Glyma.10G184900 Glycine max HOM05D005428 ORTHO05D006876 2.1e-24 117.1 116 56.9
Gohir.D09G056800 Gossypium hirsutum HOM05D005428 ORTHO05D006876 2.1e-24 117.1 198 37.9
Gorai.006G070400 Gossypium raimondii HOM05D005428 ORTHO05D006876 2.1e-24 117.1 198 37.9
Sabra10G0032700 Salix brachista HOM05D005428 ORTHO05D006876 2.1e-24 117.1 96 64.6
CiPaw.01G190000 Carya illinoinensis HOM05D005428 ORTHO05D006876 3.6e-24 116.3 119 55.5
ECA233G3252 Erigeron canadensis HOM05D005428 ORTHO05D006876 3.6e-24 116.3 96 67.7
RcHm_v2.0_Chr4g0390681 Rosa chinensis HOM05D005428 ORTHO05D006876 3.6e-24 116.3 116 55.2
vmacro08417 Vaccinium macrocarpon HOM05D005428 ORTHO05D006876 3.6e-24 116.3 96 68.8
MSTRG.24699 Avicennia marina HOM05D005428 ORTHO05D006876 4.7e-24 115.9 116 57.8
EL10Ac3g05890 Beta vulgaris HOM05D005428 ORTHO05D006876 4.7e-24 115.9 163 46.6
Ca_09838_v3 Cicer arietinum L. HOM05D005428 ORTHO05D006876 4.7e-24 115.9 119 55.5
Haze_11306 Corylus avellana HOM05D005428 ORTHO05D006876 4.7e-24 115.9 96 66.7
GSVIVG01018124001 Vitis vinifera HOM05D005428 ORTHO05D006876 4.7e-24 115.9 112 57.1
Cfa008373 Carpinus fangiana HOM05D005428 ORTHO05D006876 6.2e-24 115.5 92 68.5
Hma1.2p1_1276F.1_g272190 Hydrangea macrophylla HOM05D005428 ORTHO05D006876 6.2e-24 115.5 96 66.7
Cc03_g04910 Coffea canephora HOM05D005428 ORTHO05D006876 8.1e-24 115.2 116 59.5
AUR62015461 Chenopodium quinoa HOM05D005428 ORTHO05D006876 1.1e-23 114.8 116 58.6
Hma1.2p1_1276F.1_g272180 Hydrangea macrophylla HOM05D005428 ORTHO05D006876 1.1e-23 114.8 98 65.3
Lsat_1_v5_gn_5_72961 Lactuca sativa HOM05D005428 ORTHO05D006876 1.1e-23 114.8 116 57.8
COL.COLO4_15798 Corchorus olitorius HOM05D005428 ORTHO05D006876 1.4e-23 114.4 92 67.4
Haze_11309 Corylus avellana HOM05D005428 ORTHO05D006876 1.4e-23 114.4 92 67.4
AUR62002250 Chenopodium quinoa HOM05D005428 ORTHO05D006876 1.8e-23 114.0 116 58.6
HanXRQChr12g0386131 Helianthus annuus HOM05D005428 ORTHO05D006876 1.8e-23 114.0 123 54.5
PSO210G3950 Papaver somniferum HOM05D005428 ORTHO05D006876 1.8e-23 114.0 92 65.2
QL06p015833 Quercus lobata HOM05D005428 ORTHO05D006876 1.8e-23 114.0 112 57.1
DCAR_027281 Daucus carota HOM05D005428 ORTHO05D006876 2.4e-23 113.6 123 53.7
Sed0003134 Sechium edule HOM05D005428 ORTHO05D006876 3.1e-23 113.2 159 45.9
Os12g0597500 Oryza sativa ssp. japonica HOM05D005428 ORTHO05D006876 6.8e-23 112.1 96 65.6
Zm00001eb030970 Zea mays HOM05D005428 ORTHO05D006876 8.9e-23 111.7 96 62.5
Ah.13g066060 Amaranthus hybridus HOM05D005428 ORTHO05D006876 1.2e-22 111.3 112 57.1
ATR0665G589 Amborella trichopoda HOM05D005428 ORTHO05D006876 1.2e-22 111.3 96 65.6
Thhalv10003195m.g Eutrema salsugineum HOM05D005428 ORTHO05D006876 1.2e-22 111.3 118 57.6
CARHR006240 Cardamine hirsuta HOM05D005428 ORTHO05D006876 1.5e-22 110.9 98 64.3
PGR004G1836 Punica granatum HOM05D005428 ORTHO05D006876 2.6e-22 110.2 96 59.4
CsaV3_3G012550 Cucumis sativus L. HOM05D005428 ORTHO05D006876 3.4e-22 109.8 194 37.6
Eucgr.H03154 Eucalyptus grandis HOM05D005428 ORTHO05D006876 3.4e-22 109.8 96 62.5
Sc19g0002030 Simmondsia chinensis HOM05D005428 ORTHO05D006876 3.4e-22 109.8 96 60.4
Aa31LG5G3610 Aethionema arabicum HOM05D005428 ORTHO05D006876 4.4e-22 109.4 97 63.9
BcaC06g31687 Brassica carinata HOM05D005428 ORTHO05D006876 4.4e-22 109.4 97 66.0
Carub.0008s0503 Capsella rubella HOM05D005428 ORTHO05D006876 4.4e-22 109.4 98 65.3
AL8G16680 Arabidopsis lyrata HOM05D005428 ORTHO05D006876 5.8e-22 109.0 98 64.3
CAN.G1273.14 Capsicum annuum HOM05D000511 ORTHO05D000413 5.8e-22 109.0 82 68.3
THA.LOC104801094 Tarenaya hassleriana HOM05D005428 ORTHO05D006876 5.8e-22 109.0 97 62.9
TAR365G0225 Trochodendron aralioides HOM05D005428 ORTHO05D006876 5.8e-22 109.0 98 61.2
AT5G43600 Arabidopsis thaliana HOM05D005428 ORTHO05D006876 7.6e-22 108.6 98 65.3
Hund11855 Selenicereus undatus HOM05D005428 ORTHO05D006876 7.6e-22 108.6 123 51.2
CDE06G2174 Ceratophyllum demersum HOM05D005428 ORTHO05D006876 9.9e-22 108.2 96 62.5
ClCG05G004570 Citrullus lanatus HOM05D005428 ORTHO05D006876 1.3e-21 107.8 92 63.0
BolC7t43148H Brassica oleracea HOM05D005428 ORTHO05D006876 1.7e-21 107.5 97 64.9
A06p47790 Brassica napus HOM05D005428 ORTHO05D006876 4.9e-21 105.9 98 64.3
BraA06t27649Z Brassica rapa HOM05D005428 ORTHO05D006876 4.9e-21 105.9 98 64.3
BcaC06g34641 Brassica carinata HOM05D005428 ORTHO05D006876 8.4e-21 105.1 97 63.9
MELO3C006466.2 Cucumis melo HOM05D005428 ORTHO05D006876 1.1e-20 104.8 92 62.0
Sp2g08410 Schrenkiella parvula HOM05D005428 ORTHO05D006876 1.9e-20 104.0 98 62.2
C07p26210 Brassica napus HOM05D005428 ORTHO05D006876 4.2e-20 102.8 97 62.9
SEGI_33451 Sequoiadendron giganteum HOM05D005428 ORTHO05D006876 4.2e-20 102.8 96 58.3
HPP92_018494 Vanilla planifolia HOM05D005428 ORTHO05D006876 1.2e-19 101.3 95 58.9
HPP92_018496 Vanilla planifolia HOM05D005428 ORTHO05D006876 1.2e-19 101.3 95 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2275 Anthoceros agrestis HOM05D005428 ORTHO05D006876 4.6e-19 99.4 126 45.2
Pp3c9_12590 Physcomitrium patens HOM05D005428 ORTHO05D006876 6.0e-19 99.0 87 62.1
Mapoly0068s0045 Marchantia polymorpha HOM05D005428 ORTHO05D006876 1.3e-18 97.8 123 44.7
unitig_46.g18501 Utricularia gibba HOM05D005428 ORTHO05D006876 6.6e-18 95.5 95 56.8
unitig_47.g30761 Utricularia gibba HOM05D000453 ORTHO05D006876 6.6e-18 95.5 95 56.8
CAN.G1305.29 Capsicum annuum HOM05D005428 ORTHO05D006876 1.6e-16 90.9 122 50.0
CBR_g40439 Chara braunii HOM05D005428 ORTHO05D006876 2.1e-16 90.5 89 55.1
SMO358G0475 Selaginella moellendorffii HOM05D005428 ORTHO05D006876 5.3e-15 85.9 95 52.6
CBR_g4812 Chara braunii HOM05D005428 ORTHO05D006876 5.8e-14 82.4 93 50.5
Solyc01g100200.3 Solanum lycopersicum HOM05D000511 ORTHO05D000413 2.9e-13 80.1 79 57.0
Sopen01g043700 Solanum pennellii HOM05D000511 ORTHO05D000413 8.7e-10 68.6 74 54.1
PGSC0003DMG400024781 Solanum tuberosum HOM05D000511 ORTHO05D000413 1.9e-09 67.4 73 56.2
CAN.G792.32 Capsicum annuum HOM05D000455 ORTHO05D000434 2.5e-09 67.0 88 43.2
MCO01G069 Micromonas commoda HOM05D005428 ORTHO05D006876 2.5e-09 67.0 85 44.7
Cre06.g276700 Chlamydomonas reinhardtii HOM05D005428 ORTHO05D006876 9.6e-09 65.1 50 66.0
Nitab4.5_0001962g0080 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.6e-09 65.1 195 26.7
Sopen08g004270 Solanum pennellii HOM05D000455 ORTHO05D000434 9.6e-09 65.1 65 49.2
PGSC0003DMG401005796 Solanum tuberosum HOM05D000455 ORTHO05D000434 9.6e-09 65.1 65 49.2
Solyc08g008410.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 1.3e-08 64.7 88 42.0
Peaxi162Scf00074g00543 Petunia axillaris HOM05D000455 ORTHO05D000434 6.2e-08 62.4 63 47.6
Nitab4.5_0000368g0350 Nicotiana tabacum HOM05D000511 ORTHO05D000413 8.1e-08 62.0 77 53.2
Nitab4.5_0007285g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 8.1e-08 62.0 195 26.2
Solyc08g082750.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 1.1e-07 61.6 63 49.2
Sopen08g030980 Solanum pennellii HOM05D000455 ORTHO05D000434 1.1e-07 61.6 63 49.2
PGSC0003DMG402012256 Solanum tuberosum HOM05D000455 ORTHO05D000434 1.1e-07 61.6 63 49.2
Nitab4.5_0002793g0050 Nicotiana tabacum HOM05D000455 ORTHO05D000434 2.4e-07 60.5 102 38.2
HanXRQChr02g0047821 Helianthus annuus HOM05D000455 ORTHO05D000434 3.1e-07 60.1 63 46.0
Nitab4.5_0002367g0110 Nicotiana tabacum HOM05D000455 ORTHO05D000434 3.1e-07 60.1 99 38.4
Peaxi162Scf00102g00189 Petunia axillaris HOM05D000455 ORTHO05D000434 4.0e-07 59.7 60 48.3
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 4.0e-07 59.7 55 58.2
ECA233G4315 Erigeron canadensis HOM05D000455 ORTHO05D000434 9.0e-07 58.5 63 46.0
Lsat_1_v5_gn_6_8860 Lactuca sativa HOM05D000455 ORTHO05D000434 2.0e-06 57.4 86 37.2
MD16G1209400 Malus domestica HOM05D005428 ORTHO05D006876 2.6e-06 57.0 59 54.2
Peaxi162Scf00073g00110 Petunia axillaris HOM05D000511 ORTHO05D000413 2.6e-06 57.0 80 48.8
Gohir.D03G087700 Gossypium hirsutum HOM05D000455 ORTHO05D000434 4.5e-06 56.2 129 31.8
Gorai.003G074300 Gossypium raimondii HOM05D000455 ORTHO05D000434 4.5e-06 56.2 129 31.8
HanXRQChr07g0189401 Helianthus annuus HOM05D000455 ORTHO05D000434 4.5e-06 56.2 63 46.0
Potri.003G143000 Populus trichocarpa HOM05D000455 ORTHO05D000434 5.8e-06 55.8 63 44.4
HanXRQChr05g0133731 Helianthus annuus HOM05D000455 ORTHO05D000434 7.6e-06 55.5 85 42.4
Manes.01G053000 Manihot esculenta HOM05D000455 ORTHO05D000434 9.9e-06 55.1 86 43.0


User provided reference genes

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