Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1469.10 Capsicum annuum HOM05D003182 ORTHO05D003829 1.8e-81 305.8 150 100.0
CAN.G411.11 Capsicum annuum HOM05D003182 ORTHO05D003829 1.1e-59 233.4 135 85.9
CAN.G1425.8 Capsicum annuum HOM05D003182 ORTHO05D003829 4.9e-55 218.0 117 90.6
CAN.G206.33 Capsicum annuum HOM05D003182 ORTHO05D003829 2.4e-17 92.8 55 80.0
Nitab4.5_0003337g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 2.4e-17 92.8 44 95.5
Nitab4.5_0005176g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 2.4e-17 92.8 44 95.5
Peaxi162Scf00129g01034 Petunia axillaris HOM05D003182 ORTHO05D003829 2.4e-17 92.8 44 95.5
PGSC0003DMG402000497 Solanum tuberosum HOM05D003182 ORTHO05D003829 4.1e-17 92.0 44 93.2
Solyc02g086900.4 Solanum lycopersicum HOM05D003182 ORTHO05D003829 5.3e-17 91.7 44 90.9
Sopen02g031670 Solanum pennellii HOM05D003182 ORTHO05D003829 5.3e-17 91.7 44 90.9
Dinv24862 Davidia involucrata HOM05D003182 ORTHO05D003829 1.2e-16 90.5 44 90.9
CSS0022412 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 2.0e-16 89.7 44 90.9
Nn3g16899 Nelumbo nucifera HOM05D003182 ORTHO05D003829 2.0e-16 89.7 44 90.9
Oeu003450.3 Olea europaea HOM05D003182 ORTHO05D003829 2.0e-16 89.7 64 68.8
Oeu018700.3 Olea europaea HOM05D003182 ORTHO05D003829 2.0e-16 89.7 44 90.9
Ciclev10031446m.g Citrus clementina HOM05D003182 ORTHO05D003829 2.6e-16 89.4 44 88.6
Migut.H00124 Erythranthe guttata HOM05D003182 ORTHO05D003829 2.6e-16 89.4 44 90.9
Lju41C35G6 Lonicera japonica HOM05D003182 ORTHO05D003829 2.6e-16 89.4 44 90.9
CSS0021280 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 3.4e-16 89.0 44 88.6
DCAR_011207 Daucus carota HOM05D003182 ORTHO05D003829 3.4e-16 89.0 44 90.9
Hma1.2p1_0867F.1_g230210 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 3.4e-16 89.0 44 90.9
PGSC0003DMG400030991 Solanum tuberosum HOM05D003182 ORTHO05D003829 3.4e-16 89.0 44 90.9
SGA_v2.0_scaffold165G38249 Striga asiatica HOM05D003182 ORTHO05D003829 3.4e-16 89.0 44 90.9
THA.LOC104805399 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 3.4e-16 89.0 46 84.8
CiPaw.03G037600 Carya illinoinensis HOM05D003182 ORTHO05D003829 4.5e-16 88.6 55 72.7
Glyma.02G034400 Glycine max HOM05D003182 ORTHO05D003829 4.5e-16 88.6 61 70.5
Oeu043063.1 Olea europaea HOM05D003182 ORTHO05D003829 4.5e-16 88.6 44 90.9
vmacro18240 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 4.5e-16 88.6 44 88.6
MSTRG.24015 Avicennia marina HOM05D003182 ORTHO05D003829 5.9e-16 88.2 44 88.6
Dinv35057 Davidia involucrata HOM05D003182 ORTHO05D003829 5.9e-16 88.2 44 88.6
Atru.chr11.2016 Acer truncatum HOM05D003182 ORTHO05D003829 7.6e-16 87.8 44 86.4
Carub.0007s3536 Capsella rubella HOM05D003182 ORTHO05D003829 7.6e-16 87.8 46 84.8
ECA233G4670 Erigeron canadensis HOM05D003182 ORTHO05D003829 7.6e-16 87.8 44 88.6
Prupe.3G283700 Prunus persica HOM05D003182 ORTHO05D003829 7.6e-16 87.8 44 88.6
Atru.chr11.2009 Acer truncatum HOM05D003182 ORTHO05D003829 1.0e-15 87.4 44 84.1
Haze_14666 Corylus avellana HOM05D003182 ORTHO05D003829 1.0e-15 87.4 44 88.6
SalBow2G3598 Salvia bowleyana HOM05D003182 ORTHO05D003829 1.0e-15 87.4 64 64.1
TAR374G1615 Trochodendron aralioides HOM05D003182 ORTHO05D003829 1.0e-15 87.4 44 88.6
Aa31LG9G1350 Aethionema arabicum HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
AL7G49710 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
BcaB06g27467 Brassica carinata HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
A04p13190 Brassica napus HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
C04p46940 Brassica napus HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
BolC4t26288H Brassica oleracea HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
BraA04t16978Z Brassica rapa HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
CANSAT64G2540 Cannabis sativa HOM05D003182 ORTHO05D003829 1.3e-15 87.0 43 88.4
CARHR261820 Cardamine hirsuta HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
Thhalv10027741m.g Eutrema salsugineum HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
Lj3C1051T18 Lonicera japonica HOM05D003182 ORTHO05D003829 1.3e-15 87.0 44 86.4
PSO063G3727 Papaver somniferum HOM05D003182 ORTHO05D003829 1.3e-15 87.0 55 72.7
PSO832G1777 Papaver somniferum HOM05D003182 ORTHO05D003829 1.3e-15 87.0 55 72.7
Sp7g01670 Schrenkiella parvula HOM05D003182 ORTHO05D003829 1.3e-15 87.0 46 82.6
GSVIVG01032486001 Vitis vinifera HOM05D003182 ORTHO05D003829 1.3e-15 87.0 44 88.6
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 1.7e-15 86.7 46 80.4
Ciclev10017499m.g Citrus clementina HOM05D003182 ORTHO05D003829 1.7e-15 86.7 43 88.4
FvH4_6g50610 Fragaria vesca HOM05D003182 ORTHO05D003829 1.7e-15 86.7 55 70.9
FAN05G3372 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.7e-15 86.7 55 70.9
FAN09G2145 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.7e-15 86.7 55 70.9
FAN14G0389 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.7e-15 86.7 55 70.9
FAN14G5751 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.7e-15 86.7 55 70.9
HanXRQChr12g0368591 Helianthus annuus HOM05D003182 ORTHO05D003829 1.7e-15 86.7 44 86.4
Lsat_1_v5_gn_8_157280 Lactuca sativa HOM05D003182 ORTHO05D003829 1.7e-15 86.7 44 86.4
THA.LOC104825287 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 1.7e-15 86.7 46 82.6
Hma1.2p1_0802F.1_g220380 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 2.2e-15 86.3 44 88.6
RcHm_v2.0_Chr2g0171401 Rosa chinensis HOM05D003182 ORTHO05D003829 2.2e-15 86.3 44 86.4
TWI56G0688 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 2.2e-15 86.3 46 82.6
Aqoxy3G02981 Aquilegia oxysepala HOM05D003182 ORTHO05D003829 2.9e-15 85.9 41 92.7
AT5G40290 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 2.9e-15 85.9 43 88.4
COL.COLO4_36968 Corchorus olitorius HOM05D003182 ORTHO05D003829 2.9e-15 85.9 41 92.7
Migut.L01410 Erythranthe guttata HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 86.4
Gohir.A03G140101 Gossypium hirsutum HOM05D003182 ORTHO05D003829 2.9e-15 85.9 41 92.7
Gorai.005G182900 Gossypium raimondii HOM05D003182 ORTHO05D003829 2.9e-15 85.9 41 92.7
Lalb_Chr02g0160081 Lupinus albus HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 86.4
Lalb_Chr02g0160261 Lupinus albus HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 86.4
Manes.12G029366 Manihot esculenta HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 84.1
Rhsim08G0055300 Rhododendron simsii HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 86.4
Sopen05g001610 Solanum pennellii HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 88.6
Thecc.02G248300 Theobroma cacao HOM05D003182 ORTHO05D003829 2.9e-15 85.9 41 92.7
TPR.G2315 Trifolium pratense HOM05D003182 ORTHO05D003829 2.9e-15 85.9 44 86.4
Peaxi162Scf00338g00024 Petunia axillaris HOM05D003182 ORTHO05D003829 3.8e-15 85.5 42 90.5
Sed0022900 Sechium edule HOM05D003182 ORTHO05D003829 3.8e-15 85.5 43 90.7
TAR622G1170 Trochodendron aralioides HOM05D003182 ORTHO05D003829 3.8e-15 85.5 44 86.4
GSVIVG01020236001 Vitis vinifera HOM05D003182 ORTHO05D003829 3.8e-15 85.5 44 84.1
Cc11_g14640 Coffea canephora HOM05D003182 ORTHO05D003829 5.0e-15 85.1 44 86.4
Haze_12174 Corylus avellana HOM05D003182 ORTHO05D003829 5.0e-15 85.1 42 88.1
Glyma.13G169200 Glycine max HOM05D003182 ORTHO05D003829 5.0e-15 85.1 44 84.1
PGR083G0239 Punica granatum HOM05D003182 ORTHO05D003829 5.0e-15 85.1 42 90.5
Sc16g0005420 Simmondsia chinensis HOM05D003182 ORTHO05D003829 5.0e-15 85.1 45 84.4
arahy.Tifrunner.gnm1.ann1.5NVD8S Arachis hypogaea HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
arahy.Tifrunner.gnm1.ann1.L7KCN6 Arachis hypogaea HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
arahy.Tifrunner.gnm1.ann1.ZL6HLN Arachis hypogaea HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
Duzib147G1033 Durio zibethinus HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 84.1
FAN02G2729 Fragaria x ananassa HOM05D003182 ORTHO05D003829 6.5e-15 84.7 55 69.1
Gohir.A11G067400 Gossypium hirsutum HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 84.1
Gohir.D11G071300 Gossypium hirsutum HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 84.1
Gorai.007G076600 Gossypium raimondii HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 84.1
Lj2g0017775 Lotus japonicus HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
Medtr6g007210 Medicago truncatula HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
Phvul.004G016800 Phaseolus vulgaris HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
Thecc.04G008600 Theobroma cacao HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 84.1
VMungo0464G0504 Vigna mungo HOM05D003182 ORTHO05D003829 6.5e-15 84.7 44 86.4
Actinidia01705 Actinidia chinensis HOM05D003182 ORTHO05D003829 8.5e-15 84.3 44 84.1
Actinidia27785 Actinidia chinensis HOM05D003182 ORTHO05D003829 8.5e-15 84.3 44 84.1
Actinidia35739 Actinidia chinensis HOM05D003182 ORTHO05D003829 8.5e-15 84.3 43 86.0
CiPaw.05G150700 Carya illinoinensis HOM05D003182 ORTHO05D003829 8.5e-15 84.3 41 90.2
Ca_04201_v3 Cicer arietinum L. HOM05D003182 ORTHO05D003829 8.5e-15 84.3 44 84.1
Gohir.D02G162900 Gossypium hirsutum HOM05D003182 ORTHO05D003829 8.5e-15 84.3 41 90.2
Sc11g0001200 Simmondsia chinensis HOM05D003182 ORTHO05D003829 8.5e-15 84.3 44 84.1
SGA_v2.0_scaffold205G41704 Striga asiatica HOM05D003182 ORTHO05D003829 8.5e-15 84.3 44 79.5
CsaV3_3G042400 Cucumis sativus L. HOM05D003182 ORTHO05D003829 1.1e-14 84.0 43 88.4
CSS0050117 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 1.4e-14 83.6 44 84.1
AUR62005374 Chenopodium quinoa HOM05D003182 ORTHO05D003829 1.4e-14 83.6 42 85.7
AUR62014036 Chenopodium quinoa HOM05D003182 ORTHO05D003829 1.4e-14 83.6 42 85.7
Cc07_g02310 Coffea canephora HOM05D003182 ORTHO05D003829 1.4e-14 83.6 44 81.8
COL.COLO4_28945 Corchorus olitorius HOM05D003182 ORTHO05D003829 1.4e-14 83.6 44 81.8
Dinv15303 Davidia involucrata HOM05D003182 ORTHO05D003829 1.4e-14 83.6 43 83.7
Duzib248G0927 Durio zibethinus HOM05D003182 ORTHO05D003829 1.4e-14 83.6 44 84.1
Glyma.19G009400 Glycine max HOM05D003182 ORTHO05D003829 1.4e-14 83.6 44 81.8
Medtr5g034420 Medicago truncatula HOM05D003182 ORTHO05D003829 1.4e-14 83.6 47 80.9
QL02p076707 Quercus lobata HOM05D003182 ORTHO05D003829 1.4e-14 83.6 41 90.2
QL03p061290 Quercus lobata HOM05D003182 ORTHO05D003829 1.4e-14 83.6 42 85.7
Hund05992 Selenicereus undatus HOM05D003182 ORTHO05D003829 1.4e-14 83.6 45 80.0
ATR0730G138 Amborella trichopoda HOM05D003182 ORTHO05D003829 1.9e-14 83.2 42 85.7
Actinidia08167 Actinidia chinensis HOM05D003182 ORTHO05D003829 2.5e-14 82.8 44 84.1
EL10Ac4g08569 Beta vulgaris HOM05D003182 ORTHO05D003829 2.5e-14 82.8 44 84.1
PGR119G1400 Punica granatum HOM05D003182 ORTHO05D003829 2.5e-14 82.8 42 83.3
TPR.G13577 Trifolium pratense HOM05D003182 ORTHO05D003829 2.5e-14 82.8 53 69.8
Eucgr.J02205 Eucalyptus grandis HOM05D003182 ORTHO05D003829 3.2e-14 82.4 42 85.7
MBI16_g36058_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 3.2e-14 82.4 55 65.5
Manes.15G182900 Manihot esculenta HOM05D003182 ORTHO05D003829 3.2e-14 82.4 43 83.7
Potri.009G147800 Populus trichocarpa HOM05D003182 ORTHO05D003829 3.2e-14 82.4 41 85.4
Cpa.g.sc39.93 Carica papaya HOM05D003182 ORTHO05D003829 4.2e-14 82.0 40 92.5
Os01g0109300 Oryza sativa ssp. japonica HOM05D003182 ORTHO05D003829 4.2e-14 82.0 44 81.8
TWI18G0345 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 4.2e-14 82.0 55 70.9
CANSAT01G2334 Cannabis sativa HOM05D003182 ORTHO05D003829 5.5e-14 81.6 44 81.8
Psat2g106920 Pisum sativum HOM05D003182 ORTHO05D003829 5.5e-14 81.6 42 85.7
Zm00001eb126510 Zea mays HOM05D003182 ORTHO05D003829 5.5e-14 81.6 44 81.8
AT5G40270 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 7.2e-14 81.3 43 83.7
EL10Ac6g13670 Beta vulgaris HOM05D003182 ORTHO05D003829 7.2e-14 81.3 44 79.5
Cpa.g.sc69.27 Carica papaya HOM05D003182 ORTHO05D003829 7.2e-14 81.3 41 87.8
Ca_04599_v3 Cicer arietinum L. HOM05D003182 ORTHO05D003829 7.2e-14 81.3 46 76.1
Potri.008G190200 Populus trichocarpa HOM05D003182 ORTHO05D003829 7.2e-14 81.3 44 81.8
Sabra08G0144400 Salix brachista HOM05D003182 ORTHO05D003829 7.2e-14 81.3 44 81.8
HPP92_003803 Vanilla planifolia HOM05D003182 ORTHO05D003829 9.3e-14 80.9 55 67.3
Zm00001eb334290 Zea mays HOM05D003182 ORTHO05D003829 1.2e-13 80.5 44 79.5
Ah.02g129910 Amaranthus hybridus HOM05D003182 ORTHO05D003829 1.6e-13 80.1 41 82.9
CAN.G376.8 Capsicum annuum HOM05D003182 ORTHO05D003829 1.6e-13 80.1 41 87.8
unitig_62.g23158 Utricularia gibba HOM05D003182 ORTHO05D003829 1.6e-13 80.1 44 79.5
MBI14_g47599_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 2.1e-13 79.7 54 66.7
Ah.04g163460 Amaranthus hybridus HOM05D003182 ORTHO05D003829 2.7e-13 79.3 44 79.5
arahy.Tifrunner.gnm1.ann1.3N6FKX Arachis hypogaea HOM05D003182 ORTHO05D003829 2.7e-13 79.3 44 79.5
Hund25344 Selenicereus undatus HOM05D003182 ORTHO05D003829 2.7e-13 79.3 44 79.5
arahy.Tifrunner.gnm1.ann1.P43H24 Arachis hypogaea HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 79.5
FvH4_4g34540 Fragaria vesca HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 77.3
FAN07G1249 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 77.3
FAN12G1714 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 77.3
FAN17G1146 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 77.3
FAN22G1320 Fragaria x ananassa HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 77.3
MD09G1034800 Malus domestica HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 79.5
vmacro01182 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 3.6e-13 79.0 44 81.8
Rhsim12G0047300 Rhododendron simsii HOM05D003182 ORTHO05D003829 4.6e-13 78.6 44 81.8
RhsimUnG0091000 Rhododendron simsii HOM05D003182 ORTHO05D003829 4.6e-13 78.6 44 81.8
Sabra09G0114000 Salix brachista HOM05D003182 ORTHO05D003829 6.1e-13 78.2 41 82.9
Sabra09G0116500 Salix brachista HOM05D003182 ORTHO05D003829 6.1e-13 78.2 41 82.9
DCAR_007091 Daucus carota HOM05D003182 ORTHO05D003829 7.9e-13 77.8 44 79.5
unitig_8.g3167 Utricularia gibba HOM05D003182 ORTHO05D003829 7.9e-13 77.8 42 76.2
MBI14_g43980_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 1.0e-12 77.4 42 81.0
RcHm_v2.0_Chr4g0443921 Rosa chinensis HOM05D003182 ORTHO05D003829 1.0e-12 77.4 41 80.5
Lalb_Chr05g0228151 Lupinus albus HOM05D003182 ORTHO05D003829 1.8e-12 76.6 43 79.1
Nitab4.5_0018380g0010 Nicotiana tabacum HOM05D003182 ORTHO05D003829 1.8e-12 76.6 73 58.9
MD16G1092000 Malus domestica HOM05D003182 ORTHO05D003829 2.3e-12 76.3 44 72.7
Mapoly0016s0133 Marchantia polymorpha HOM05D003182 ORTHO05D003829 5.1e-12 75.1 44 75.0
Nitab4.5_0000113g0300 Nicotiana tabacum HOM05D003182 ORTHO05D003829 1.1e-11 73.9 51 70.6
Prupe.1G254300 Prunus persica HOM05D003182 ORTHO05D003829 1.9e-11 73.2 44 75.0
SEGI_37434 Sequoiadendron giganteum HOM05D003182 ORTHO05D003829 3.3e-11 72.4 44 75.0
Solyc05g005600.1 Solanum lycopersicum HOM05D003182 ORTHO05D003829 1.3e-10 70.5 36 88.9
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.7e-10 70.1 44 75.0
Pp3c17_2920 Physcomitrium patens HOM05D003182 ORTHO05D003829 2.8e-10 69.3 41 73.2
SMO141G0095 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 1.1e-09 67.4 83 48.2
SMO170G0050 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 1.1e-09 67.4 72 50.0
SMO356G0066 Selaginella moellendorffii HOM05D003182 ORTHO05D003829 1.2e-08 63.9 33 84.8
MELO3C027442.2 Cucumis melo HOM05D007588 ORTHO05D001339 5.9e-08 61.6 47 63.8
Cre09.g409801 Chlamydomonas reinhardtii HOM05D003182 ORTHO05D003829 7.2e-06 54.7 37 64.9


User provided reference genes

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