Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1459.4 Capsicum annuum HOM05D003167 ORTHO05D003929 1.3e-38 162.5 82 100.0
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 1.9e-16 89.0 54 75.9
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 1.9e-16 89.0 54 75.9
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 2.5e-16 88.6 54 75.9
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 4.2e-16 87.8 54 75.9
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 7.1e-16 87.0 54 74.1
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 2.1e-15 85.5 54 74.1
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.0e-14 83.2 103 46.6
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 6.7e-14 80.5 54 66.7
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 1.5e-13 79.3 54 64.8
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 1.5e-13 79.3 54 64.8
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 1.9e-13 79.0 54 64.8
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 2.5e-13 78.6 54 64.8
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 2.5e-13 78.6 54 64.8
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 3.3e-13 78.2 54 63.0
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 3.3e-13 78.2 54 63.0
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 3.3e-13 78.2 54 63.0
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 3.3e-13 78.2 54 63.0
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 4.3e-13 77.8 54 63.0
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 5.7e-13 77.4 54 63.0
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 5.7e-13 77.4 54 63.0
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 7.4e-13 77.0 54 61.1
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 7.4e-13 77.0 54 61.1
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 7.4e-13 77.0 54 63.0
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 7.4e-13 77.0 54 61.1
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 9.6e-13 76.6 54 61.1
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 61.1
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 61.1
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 59.3
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 59.3
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 59.3
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.3e-12 76.3 54 59.3
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.6e-12 75.9 54 61.1
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 1.6e-12 75.9 54 59.3
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 1.6e-12 75.9 54 61.1
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 61.1
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 61.1
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 63.0
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 59.3
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 61.1
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 59.3
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 61.1
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 2.1e-12 75.5 54 57.4
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 2.8e-12 75.1 59 59.3
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 2.8e-12 75.1 54 61.1
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 59.3
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 59.3
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 59.3
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 59.3
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 59.3
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 64.8
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 3.7e-12 74.7 54 57.4
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 4.8e-12 74.3 54 59.3
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 4.8e-12 74.3 54 61.1
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 4.8e-12 74.3 54 59.3
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 4.8e-12 74.3 54 59.3
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 4.8e-12 74.3 54 59.3
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 6.2e-12 73.9 54 59.3
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 6.2e-12 73.9 54 59.3
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 6.2e-12 73.9 54 59.3
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 6.2e-12 73.9 54 59.3
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 8.2e-12 73.6 54 59.3
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.2e-12 73.6 54 57.4
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.2e-12 73.6 54 57.4
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 8.2e-12 73.6 54 59.3
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 1.1e-11 73.2 53 64.2
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.1e-11 73.2 53 58.5
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 59.3
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.1e-11 73.2 54 61.1
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 1.4e-11 72.8 54 57.4
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.8e-11 72.4 54 57.4
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 1.8e-11 72.4 53 58.5
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.4e-11 72.0 54 57.4
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 2.4e-11 72.0 54 61.1
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 2.4e-11 72.0 54 61.1
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 2.4e-11 72.0 54 57.4
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 2.4e-11 72.0 54 57.4
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 57.4
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 59.3
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 55.6
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 57.4
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 59.3
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 53.7
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 59.3
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 3.1e-11 71.6 54 59.3
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 4.0e-11 71.2 54 57.4
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 4.0e-11 71.2 54 57.4
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 55.6
CARHR131200 Cardamine hirsuta HOM05D003167 ORTHO05D003929 5.3e-11 70.9 58 56.9
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 55.6
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 55.6
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 55.6
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 57.4
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 5.3e-11 70.9 53 56.6
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 5.3e-11 70.9 54 55.6
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 5.3e-11 70.9 53 52.8
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 6.9e-11 70.5 54 53.7
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 6.9e-11 70.5 54 57.4
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 1.2e-10 69.7 54 57.4
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 1.2e-10 69.7 54 55.6
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 2.0e-10 68.9 54 53.7
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 2.6e-10 68.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 3.4e-10 68.2 54 51.9
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 4.5e-10 67.8 54 53.7
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 1.0e-09 66.6 54 55.6
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.7e-09 65.9 54 51.9
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 2.2e-09 65.5 54 55.6
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 2.9e-09 65.1 54 46.3
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.8e-09 64.7 54 51.9
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 5.0e-09 64.3 58 50.0
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 5.0e-09 64.3 69 47.8
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 1.1e-08 63.2 51 54.9
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 1.9e-08 62.4 51 56.9
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 4.2e-08 61.2 54 50.0
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 7.1e-08 60.5 51 54.9
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 7.1e-08 60.5 56 51.8
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 7.1e-08 60.5 56 51.8
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.2e-07 59.7 52 48.1
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 2.7e-07 58.5 54 51.9
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.5e-07 58.2 62 50.0
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.5e-07 58.2 83 37.3
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.5e-07 58.2 83 37.3
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 1.8e-06 55.8 96 33.3
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.1e-06 54.3 80 36.2
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 5.1e-06 54.3 53 41.5


User provided reference genes

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