Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G144.5 Capsicum annuum HOM05D000169 ORTHO05D004780 3.4e-101 371.7 190 100.0
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.0e-73 280.4 163 85.9
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 2.3e-73 279.3 157 87.9
Nitab4.5_0002859g0130 Nicotiana tabacum HOM05D000169 ORTHO05D004780 8.6e-73 277.3 163 85.3
PGSC0003DMG400026465 Solanum tuberosum HOM05D000169 ORTHO05D004780 8.6e-73 277.3 159 88.1
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 1.3e-68 263.5 160 81.2
Nitab4.5_0001315g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004780 2.1e-58 229.6 163 72.4
Nitab4.5_0011683g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 2.3e-57 226.1 163 71.8
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 7.6e-53 211.1 157 70.1
Peaxi162Scf00015g00126 Petunia axillaris HOM05D000169 ORTHO05D004780 8.4e-52 207.6 140 76.4
Lj5A57T75 Lonicera japonica HOM05D000169 ORTHO05D004780 2.8e-47 192.6 156 66.0
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 1.1e-46 190.7 158 61.4
Actinidia21686 Actinidia chinensis HOM05D000169 ORTHO05D004780 1.2e-45 187.2 155 61.3
vmacro18881 Vaccinium macrocarpon HOM05D000169 ORTHO05D004780 2.0e-45 186.4 148 64.9
Hma1.2p1_1195F.1_g265900 Hydrangea macrophylla HOM05D000169 ORTHO05D004780 3.4e-45 185.7 155 61.9
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 5.8e-45 184.9 150 61.3
CANSAT56G0566 Cannabis sativa HOM05D000169 ORTHO05D004780 5.8e-45 184.9 156 63.5
SGA_v2.0_scaffold5G02549 Striga asiatica HOM05D000169 ORTHO05D004780 2.2e-44 183.0 153 62.1
Oeu000461.2 Olea europaea HOM05D000169 ORTHO05D004780 3.8e-44 182.2 152 62.5
Migut.I00934 Erythranthe guttata HOM05D000169 ORTHO05D004780 6.4e-44 181.4 150 64.7
Cc04_g02960 Coffea canephora HOM05D000169 ORTHO05D004780 8.4e-44 181.0 157 62.4
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 1.1e-43 180.6 169 56.8
CiPaw.02G148300 Carya illinoinensis HOM05D000169 ORTHO05D004780 1.1e-43 180.6 153 63.4
MSTRG.11049 Avicennia marina HOM05D000169 ORTHO05D004780 1.4e-43 180.3 141 63.1
TAR636G0874 Trochodendron aralioides HOM05D000169 ORTHO05D004780 1.4e-43 180.3 155 61.9
FAN14G0873 Fragaria x ananassa HOM05D000169 ORTHO05D004780 4.2e-43 178.7 161 59.6
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 4.2e-43 178.7 159 57.9
Manes.11G037400 Manihot esculenta HOM05D000169 ORTHO05D004780 4.2e-43 178.7 149 61.1
FAN05G1415 Fragaria x ananassa HOM05D000169 ORTHO05D004780 7.1e-43 177.9 161 59.6
Eucgr.J02955 Eucalyptus grandis HOM05D000169 ORTHO05D004780 9.3e-43 177.6 148 60.1
Aqoxy7G01575 Aquilegia oxysepala HOM05D000169 ORTHO05D004780 1.2e-42 177.2 157 61.1
GSVIVG01017056001 Vitis vinifera HOM05D000169 ORTHO05D004780 1.2e-42 177.2 149 60.4
FvH4_6g31860 Fragaria vesca HOM05D000169 ORTHO05D004780 1.6e-42 176.8 153 62.1
Nn2g11670 Nelumbo nucifera HOM05D000169 ORTHO05D004780 1.6e-42 176.8 151 60.3
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 1.6e-42 176.8 144 63.2
TAR624G1376 Trochodendron aralioides HOM05D000169 ORTHO05D004780 1.6e-42 176.8 146 65.1
Haze_16349 Corylus avellana HOM05D000169 ORTHO05D004780 2.1e-42 176.4 152 60.5
ECA232G3766 Erigeron canadensis HOM05D000169 ORTHO05D004780 2.1e-42 176.4 152 61.2
Nitab4.5_0003054g0020 Nicotiana tabacum HOM05D000169 ORTHO05D004780 2.1e-42 176.4 158 62.7
TWI12G1479 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 2.1e-42 176.4 158 63.3
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 2.7e-42 176.0 156 59.6
ClCG10G006410 Citrullus lanatus HOM05D000169 ORTHO05D004780 2.7e-42 176.0 146 59.6
SalBow2G1665 Salvia bowleyana HOM05D000169 ORTHO05D004780 2.7e-42 176.0 153 59.5
Cfa002101 Carpinus fangiana HOM05D000169 ORTHO05D004780 6.0e-42 174.9 150 62.0
MELO3C016565.2 Cucumis melo HOM05D000169 ORTHO05D004780 6.0e-42 174.9 151 58.3
DCAR_026335 Daucus carota HOM05D000169 ORTHO05D004780 6.0e-42 174.9 162 58.0
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 6.0e-42 174.9 155 62.6
RcHm_v2.0_Chr2g0139171 Rosa chinensis HOM05D000169 ORTHO05D004780 6.0e-42 174.9 153 61.4
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 6.0e-42 174.9 148 62.2
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 1.0e-41 174.1 156 59.0
Duzib160G0343 Durio zibethinus HOM05D000169 ORTHO05D004780 1.3e-41 173.7 153 58.8
CiPaw.01G235100 Carya illinoinensis HOM05D000169 ORTHO05D004780 3.0e-41 172.6 141 63.8
PSO566G0043 Papaver somniferum HOM05D000169 ORTHO05D004780 3.0e-41 172.6 152 59.2
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 3.0e-41 172.6 144 60.4
QL05p021511 Quercus lobata HOM05D000169 ORTHO05D004780 3.9e-41 172.2 150 60.7
unitig_748.g7432 Utricularia gibba HOM05D000169 ORTHO05D004780 3.9e-41 172.2 152 60.5
Psat7g253800 Pisum sativum HOM05D000169 ORTHO05D004780 5.1e-41 171.8 145 63.4
Sabra01G0154600 Salix brachista HOM05D000169 ORTHO05D004780 5.1e-41 171.8 150 58.7
Thecc.06G093200 Theobroma cacao HOM05D000169 ORTHO05D004780 5.1e-41 171.8 159 56.6
Ciclev10025185m.g Citrus clementina HOM05D000169 ORTHO05D004780 6.7e-41 171.4 141 63.1
PSO782G1073 Papaver somniferum HOM05D000169 ORTHO05D004780 1.1e-40 170.6 152 58.6
Potri.001G185500 Populus trichocarpa HOM05D000169 ORTHO05D004780 1.1e-40 170.6 148 62.2
A01p37930 Brassica napus HOM05D000169 ORTHO05D004780 1.5e-40 170.2 141 65.2
Sed0000326 Sechium edule HOM05D000169 ORTHO05D004780 1.5e-40 170.2 151 55.6
Ca_20416_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 3.3e-40 169.1 149 61.1
MD17G1190300 Malus domestica HOM05D000169 ORTHO05D004780 4.3e-40 168.7 153 58.8
Thhalv10020466m.g Eutrema salsugineum HOM05D000169 ORTHO05D004780 5.6e-40 168.3 141 63.1
Gohir.D10G069600 Gossypium hirsutum HOM05D000169 ORTHO05D004780 5.6e-40 168.3 160 56.9
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 7.4e-40 167.9 138 63.8
Atru.chr1.3409_Atru.chr1.3410 Acer truncatum HOM05D000169 ORTHO05D004780 9.6e-40 167.5 139 61.2
TWI75G0003 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 9.6e-40 167.5 143 63.6
AT3G16170 Arabidopsis thaliana HOM05D000169 ORTHO05D004780 1.3e-39 167.2 138 64.5
Gohir.A10G081900 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.3e-39 167.2 153 59.5
MBI01_g30862_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004780 1.6e-39 166.8 162 54.9
Gorai.011G073700 Gossypium raimondii HOM05D000169 ORTHO05D004780 2.1e-39 166.4 152 59.2
Sp3g14530 Schrenkiella parvula HOM05D000169 ORTHO05D004780 2.1e-39 166.4 141 64.5
AL3G28850 Arabidopsis lyrata HOM05D000169 ORTHO05D004780 2.8e-39 166.0 141 63.1
Carub.0003s1591 Capsella rubella HOM05D000169 ORTHO05D004780 2.8e-39 166.0 141 63.1
Oeu033511.1 Olea europaea HOM05D000169 ORTHO05D004780 3.7e-39 165.6 151 56.3
TPR.G27504 Trifolium pratense HOM05D000169 ORTHO05D004780 3.7e-39 165.6 143 60.1
Zm00001eb152410 Zea mays HOM05D000169 ORTHO05D004780 4.8e-39 165.2 146 56.8
ATR0315G057 Amborella trichopoda HOM05D000169 ORTHO05D004780 6.2e-39 164.9 161 54.7
Ca_20370_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 6.2e-39 164.9 149 60.4
COL.COLO4_30442 Corchorus olitorius HOM05D000169 ORTHO05D004780 6.2e-39 164.9 140 61.4
A05p33330 Brassica napus HOM05D000169 ORTHO05D004780 8.1e-39 164.5 141 63.8
Lalb_Chr25g0280011 Lupinus albus HOM05D000169 ORTHO05D004780 8.1e-39 164.5 145 57.9
MD09G1208800 Malus domestica HOM05D000169 ORTHO05D004780 8.1e-39 164.5 167 54.5
Medtr4g011790 Medicago truncatula HOM05D000169 ORTHO05D004780 8.1e-39 164.5 145 60.7
THA.LOC104817978 Tarenaya hassleriana HOM05D000169 ORTHO05D004780 8.1e-39 164.5 143 62.2
TPR.G38605 Trifolium pratense HOM05D000169 ORTHO05D004780 8.1e-39 164.5 144 61.1
CARHR091330 Cardamine hirsuta HOM05D000169 ORTHO05D004780 1.1e-38 164.1 138 63.0
BcaB06g25712 Brassica carinata HOM05D000169 ORTHO05D004780 3.1e-38 162.5 143 60.1
Cpa.g.sc296.4 Carica papaya HOM05D000169 ORTHO05D004780 4.0e-38 162.2 154 55.8
BraA01t03853Z Brassica rapa HOM05D000169 ORTHO05D004780 5.3e-38 161.8 141 61.7
BolC1t04779H Brassica oleracea HOM05D000169 ORTHO05D004780 6.9e-38 161.4 139 60.4
Lj3g0027736 Lotus japonicus HOM05D000169 ORTHO05D004780 9.0e-38 161.0 146 57.5
Medtr4g013210 Medicago truncatula HOM05D000169 ORTHO05D004780 2.6e-37 159.5 141 61.0
Psat3g156160 Pisum sativum HOM05D000169 ORTHO05D004780 2.6e-37 159.5 146 58.9
Psat7g253640 Pisum sativum HOM05D000169 ORTHO05D004780 2.6e-37 159.5 145 59.3
arahy.Tifrunner.gnm1.ann1.4P55VP Arachis hypogaea HOM05D000169 ORTHO05D004780 3.4e-37 159.1 145 60.0
arahy.Tifrunner.gnm1.ann1.5X7XAP Arachis hypogaea HOM05D000169 ORTHO05D004780 3.4e-37 159.1 142 58.5
C05p50330 Brassica napus HOM05D000169 ORTHO05D004780 4.5e-37 158.7 140 62.1
Glyma.08G204300 Glycine max HOM05D000169 ORTHO05D004780 4.5e-37 158.7 146 57.5
BraA05t22158Z Brassica rapa HOM05D000169 ORTHO05D004780 5.8e-37 158.3 141 61.7
Phvul.010G148300 Phaseolus vulgaris HOM05D000169 ORTHO05D004780 1.0e-36 157.5 147 55.8
Glyma.07G019100 Glycine max HOM05D000169 ORTHO05D004780 2.9e-36 156.0 147 55.8
CDE05G2910 Ceratophyllum demersum HOM05D000169 ORTHO05D004780 4.9e-36 155.2 150 52.7
BolC5t33782H Brassica oleracea HOM05D000169 ORTHO05D004780 2.5e-35 152.9 151 58.3
VMungo0331G1448 Vigna mungo HOM05D000169 ORTHO05D004780 7.1e-35 151.4 150 52.7
Cpa.g.c28291.1 Carica papaya HOM05D000169 ORTHO05D004780 9.3e-35 151.0 147 54.4
Pp3c1_9430 Physcomitrium patens HOM05D000169 ORTHO05D004780 2.3e-33 146.4 147 51.0
SMO203G0257 Selaginella moellendorffii HOM05D000169 ORTHO05D004780 3.0e-33 146.0 149 49.0
Hund06638 Selenicereus undatus HOM05D000169 ORTHO05D004780 4.3e-32 142.1 132 57.6
SEGI_23005 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 4.3e-32 142.1 151 49.0
CsaV3_3G005890 Cucumis sativus L. HOM05D000169 ORTHO05D004780 2.4e-30 136.3 101 65.3
Mapoly0036s0029 Marchantia polymorpha HOM05D000169 ORTHO05D004780 1.7e-28 130.2 143 48.3
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 5.0e-28 128.6 123 60.2
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 2.5e-27 126.3 123 60.2
Pp3c19_10110 Physcomitrium patens HOM05D000169 ORTHO05D004780 3.2e-27 125.9 139 48.2
Mapoly0003s0295 Marchantia polymorpha HOM05D000169 ORTHO05D004780 2.3e-25 119.8 170 40.6
TPR.G5245 Trifolium pratense HOM05D000169 ORTHO05D004780 2.5e-24 116.3 89 66.3
Nitab4.5_0001227g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 4.8e-23 112.1 97 61.9
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.4e-19 100.5 75 65.3
CBR_g3023 Chara braunii HOM05D000169 ORTHO05D004780 2.7e-18 96.3 208 31.2
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.6e-18 95.9 57 77.2
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 3.6e-18 95.9 74 64.9
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 4.6e-18 95.5 57 80.7
Lsat_1_v5_gn_9_96380 Lactuca sativa HOM05D012938 ORTHO05D004780 7.9e-18 94.7 107 49.5
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 2.3e-17 93.2 57 77.2
Dinv30473 Davidia involucrata HOM05D000169 ORTHO05D004780 8.8e-17 91.3 96 52.1
PRCOL_00000351 Prasinoderma coloniale HOM05D000169 ORTHO05D004780 1.1e-16 90.9 148 35.1
C01p48140 Brassica napus HOM05D000169 ORTHO05D004780 2.0e-16 90.1 166 39.2
SEGI_02233 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 2.5e-16 89.7 67 61.2
CBR_g41790 Chara braunii HOM05D002985 ORTHO05D003335 4.3e-16 89.0 201 30.8
SHI18051 Sapria himalayana HOM05D000169 ORTHO05D004780 4.8e-15 85.5 83 53.0
BcaB07g30450 Brassica carinata HOM05D000169 ORTHO05D004780 4.1e-14 82.4 46 84.8
BcaB07g30448 Brassica carinata HOM05D000169 ORTHO05D004780 5.3e-14 82.0 46 84.8
Lsat_1_v5_gn_3_30240 Lactuca sativa HOM05D000169 ORTHO05D004780 7.7e-13 78.2 59 66.1
SHI18050 Sapria himalayana HOM05D000169 ORTHO05D004780 5.5e-11 72.0 103 39.8
BcaB07g30452 Brassica carinata HOM05D000169 ORTHO05D004780 1.6e-10 70.5 39 82.1
MCO15G682 Micromonas commoda HOM05D000169 ORTHO05D004780 2.7e-10 69.7 158 27.8
Cre13.g586000 Chlamydomonas reinhardtii HOM05D000169 ORTHO05D004780 4.7e-10 68.9 136 30.9
Lj1g0020677 Lotus japonicus HOM05D000324 ORTHO05D002625 7.4e-08 61.6 156 28.8
Psat0s3793g0040 Pisum sativum HOM05D001826 ORTHO05D007448 7.4e-08 61.6 68 52.9
SEGI_14736 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 9.7e-08 61.2 47 55.3
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 4.8e-07 58.9 138 26.8
Ca_16338_v3 Cicer arietinum L. HOM05D000324 ORTHO05D002625 6.3e-07 58.5 158 27.8
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.1e-06 57.8 138 29.7
Psat2g015720 Pisum sativum HOM05D000169 ORTHO05D004780 1.1e-06 57.8 95 38.9
CDE02G0155 Ceratophyllum demersum HOM05D000324 ORTHO05D002625 1.8e-06 57.0 160 26.9
Glyma.20G060100 Glycine max HOM05D000324 ORTHO05D002625 1.8e-06 57.0 163 25.2
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 1.8e-06 57.0 144 25.7
Sed0026910 Sechium edule HOM05D000324 ORTHO05D002625 2.4e-06 56.6 157 28.0
arahy.Tifrunner.gnm1.ann1.6U9WG4 Arachis hypogaea HOM05D000324 ORTHO05D002625 3.1e-06 56.2 161 24.8
arahy.Tifrunner.gnm1.ann1.EW431R Arachis hypogaea HOM05D000324 ORTHO05D002625 3.1e-06 56.2 161 24.8
MELO3C010479.2 Cucumis melo HOM05D000324 ORTHO05D002625 3.1e-06 56.2 159 28.9
Glyma.13G010100 Glycine max HOM05D000324 ORTHO05D002625 3.1e-06 56.2 163 25.2
VMungo0331G0574 Vigna mungo HOM05D000804 ORTHO05D005389 3.1e-06 56.2 147 26.5
CARHR071100 Cardamine hirsuta HOM05D000324 ORTHO05D002625 4.1e-06 55.8 153 29.4
FAN24G2061 Fragaria x ananassa HOM05D000324 ORTHO05D002625 4.1e-06 55.8 154 26.6
Manes.02G162800 Manihot esculenta HOM05D000324 ORTHO05D002625 4.1e-06 55.8 151 27.8
Manes.18G077648 Manihot esculenta HOM05D000324 ORTHO05D002625 4.1e-06 55.8 157 27.4
Sabra14G0129200 Salix brachista HOM05D000324 ORTHO05D002625 4.1e-06 55.8 158 25.9
AT1G77590 Arabidopsis thaliana HOM05D000324 ORTHO05D002625 5.3e-06 55.5 153 28.8
FvH4_2g26850 Fragaria vesca HOM05D000324 ORTHO05D002625 5.3e-06 55.5 154 26.6
PSO528G0028 Papaver somniferum HOM05D000324 ORTHO05D002625 5.3e-06 55.5 156 29.5
Phvul.006G005500 Phaseolus vulgaris HOM05D000324 ORTHO05D002625 5.3e-06 55.5 159 27.7
Psat5g104800 Pisum sativum HOM05D000324 ORTHO05D002625 5.3e-06 55.5 158 26.6
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 5.3e-06 55.5 147 23.8
VMungo0540G2263 Vigna mungo HOM05D000324 ORTHO05D002625 5.3e-06 55.5 159 25.8
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 7.0e-06 55.1 149 24.8
TAR375G0260 Trochodendron aralioides HOM05D000804 ORTHO05D005389 7.0e-06 55.1 139 28.1
ATR0584G176 Amborella trichopoda HOM05D000324 ORTHO05D002625 9.1e-06 54.7 161 28.0
CsaV3_4G028240 Cucumis sativus L. HOM05D000324 ORTHO05D002625 9.1e-06 54.7 157 28.0
SalBow1G2391 Salvia bowleyana HOM05D000169 ORTHO05D001214 9.1e-06 54.7 154 26.0
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 9.1e-06 54.7 134 25.4


User provided reference genes

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