Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 8.2e-26 119.8 68 100.0
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 3.0e-20 101.3 68 73.5
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 3.0e-20 101.3 53 94.3
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 5.2e-20 100.5 53 92.5
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.2e-19 99.4 66 74.2
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.2e-19 99.4 66 74.2
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.5e-19 99.0 53 92.5
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.0e-19 98.6 53 90.6
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.0e-19 98.6 53 90.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 2.6e-19 98.2 55 87.3
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 2.6e-19 98.2 53 86.8
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 3.4e-19 97.8 66 72.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 7.5e-19 96.7 66 71.2
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 7.5e-19 96.7 53 84.9
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 7.5e-19 96.7 53 83.0
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 7.5e-19 96.7 63 74.6
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 9.7e-19 96.3 66 71.2
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 1.7e-18 95.5 53 84.9
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.7e-18 95.5 64 75.0
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.2e-18 95.1 66 69.7
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 2.2e-18 95.1 64 73.4
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 3.7e-18 94.4 64 71.9
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.7e-18 94.4 53 83.0
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 3.7e-18 94.4 53 84.9
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 3.7e-18 94.4 65 70.8
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 4.8e-18 94.0 53 83.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 8.3e-18 93.2 65 75.4
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 1.4e-17 92.4 53 79.2
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.8e-17 92.0 53 84.9
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.8e-17 92.0 53 84.9
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.8e-17 92.0 65 69.2
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.8e-17 92.0 53 84.9
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.8e-17 92.0 66 68.2
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 2.4e-17 91.7 53 83.0
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 3.1e-17 91.3 63 68.3
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 4.1e-17 90.9 67 64.2
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 4.1e-17 90.9 53 75.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 5.3e-17 90.5 53 81.1
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 5.3e-17 90.5 53 81.1
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 7.0e-17 90.1 53 81.1
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 9.1e-17 89.7 53 81.1
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 9.1e-17 89.7 53 83.0
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 1.2e-16 89.4 61 72.1
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.2e-16 89.4 53 81.1
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.6e-16 89.0 53 77.4
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.6e-16 89.0 66 66.7
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.6e-16 89.0 53 84.9
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.0e-16 88.6 53 79.2
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 2.0e-16 88.6 53 81.1
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 2.7e-16 88.2 53 79.2
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 3.5e-16 87.8 66 63.6
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 4.5e-16 87.4 53 77.4
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 5.9e-16 87.0 53 75.5
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 5.9e-16 87.0 53 79.2
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 7.7e-16 86.7 64 67.2
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 1.0e-15 86.3 55 74.5
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 1.0e-15 86.3 53 77.4
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 1.7e-15 85.5 67 64.2
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 1.7e-15 85.5 53 77.4
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 2.2e-15 85.1 61 68.9
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 2.9e-15 84.7 53 71.7
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 3.8e-15 84.3 53 73.6
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 5.0e-15 84.0 63 60.3
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 1.1e-14 82.8 53 73.6
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.9e-14 82.0 53 73.6
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 2.5e-14 81.6 50 74.0
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.5e-14 81.6 50 72.0
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 2.5e-14 81.6 50 74.0
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 2.5e-14 81.6 50 74.0
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 2.5e-14 81.6 50 72.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 2.5e-14 81.6 53 73.6
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 2.5e-14 81.6 53 77.4
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 3.2e-14 81.3 53 73.6
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 5.5e-14 80.5 50 74.0
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 9.4e-14 79.7 61 62.3
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 9.4e-14 79.7 61 62.3
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 1.2e-13 79.3 50 72.0
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 1.2e-13 79.3 50 72.0
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.6e-13 79.0 48 77.1
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.6e-13 79.0 63 58.7
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 2.7e-13 78.2 50 72.0
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 1.0e-12 76.3 52 67.3
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 3.0e-12 74.7 52 69.2
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 5.2e-12 73.9 45 77.8
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.2e-11 72.8 51 66.7
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 1.5e-11 72.4 46 76.1
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.3e-10 69.3 53 64.2
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.3e-10 69.3 43 76.7
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 4.1e-09 64.3 40 77.5
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 5.4e-09 63.9 40 77.5
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 1.2e-08 62.8 35 85.7
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 8.6e-07 56.6 37 73.0


User provided reference genes

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