Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.8e-61 238.4 121 100.0
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-21 106.7 63 92.1
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.7e-21 105.1 63 90.5
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.9e-21 104.8 63 90.5
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.1e-20 103.6 64 92.2
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.1e-20 103.6 64 92.2
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.4e-20 103.2 64 85.9
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.4e-20 102.4 64 84.4
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.4e-20 102.4 64 84.4
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.2e-20 102.1 64 82.8
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 7.0e-20 100.9 64 82.8
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.2e-19 100.1 63 82.5
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.0e-19 99.4 63 82.5
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.6e-19 98.2 63 84.1
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.6e-19 98.2 63 82.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 4.6e-19 98.2 63 82.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 6.0e-19 97.8 63 84.1
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 7.8e-19 97.4 63 84.1
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 7.8e-19 97.4 63 81.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.0e-18 97.1 63 81.0
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.0e-18 97.1 64 84.4
CAN.G151.14 Capsicum annuum HOM05D062499 ORTHO05D115711 1.3e-18 96.7 118 49.2
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.3e-18 96.7 63 82.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.7e-18 96.3 62 82.3
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.7e-18 96.3 63 79.4
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.3e-18 95.9 64 78.1
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.3e-18 95.9 64 78.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.3e-18 95.9 63 81.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.3e-18 95.9 63 79.4
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 3.0e-18 95.5 63 79.4
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.0e-18 95.5 63 81.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.0e-18 95.5 59 84.7
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.0e-18 95.5 63 81.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 3.9e-18 95.1 59 84.7
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.9e-18 95.1 59 84.7
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.9e-18 95.1 59 84.7
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 3.9e-18 95.1 63 76.2
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.9e-18 95.1 63 81.0
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 3.9e-18 95.1 64 78.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.0e-18 94.7 64 79.7
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.6e-18 94.0 63 77.8
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.6e-18 94.0 64 76.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 8.6e-18 94.0 63 77.8
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 8.6e-18 94.0 65 80.0
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.1e-17 93.6 64 76.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.5e-17 93.2 63 79.4
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.5e-17 93.2 63 76.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.5e-17 93.2 62 80.6
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-17 92.8 65 76.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-17 92.8 65 76.9
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.9e-17 92.8 63 77.8
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.9e-17 92.8 63 79.4
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.9e-17 92.8 63 79.4
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.5e-17 92.4 63 77.8
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.3e-17 92.0 63 76.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 4.3e-17 91.7 65 78.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 5.6e-17 91.3 63 76.2
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 7.3e-17 90.9 62 77.4
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.5e-17 90.5 63 74.6
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 9.5e-17 90.5 61 80.3
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.2e-16 90.1 62 77.4
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.1e-16 89.4 62 79.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.8e-16 89.0 64 76.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.6e-16 88.6 59 79.7
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.6e-16 88.6 67 76.1
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.7e-16 88.2 78 67.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 4.7e-16 88.2 65 81.5
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.2e-16 87.8 66 77.3
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 6.2e-16 87.8 59 81.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.2e-16 87.8 63 74.6
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 8.1e-16 87.4 63 74.6
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 8.1e-16 87.4 64 70.3
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.1e-15 87.0 64 73.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.1e-15 87.0 59 81.4
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.4e-15 86.7 63 71.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.4e-15 86.7 64 76.6
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.4e-15 86.7 63 74.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.8e-15 86.3 64 73.4
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.3e-15 85.9 64 75.0
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.1e-15 85.5 59 79.7
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.1e-15 85.5 59 76.3
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 3.1e-15 85.5 65 75.4
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.0e-15 85.1 64 73.4
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 4.0e-15 85.1 66 75.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 4.0e-15 85.1 66 71.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 6.8e-15 84.3 66 75.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 6.8e-15 84.3 65 73.8
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 8.9e-15 84.0 64 75.0
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 8.9e-15 84.0 66 74.2
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 8.9e-15 84.0 65 70.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 8.9e-15 84.0 59 79.7
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.2e-14 83.6 64 75.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.2e-14 83.6 64 71.9
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.5e-14 83.2 66 77.3
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.5e-14 83.2 63 74.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.0e-14 82.8 62 79.0
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.0e-14 82.8 64 70.3
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.0e-14 82.8 64 70.3
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.0e-14 82.8 64 70.3
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 5.8e-14 81.3 64 70.3
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 7.5e-14 80.9 62 69.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 9.8e-14 80.5 62 67.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 9.8e-14 80.5 68 69.1
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-13 79.3 66 75.8
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-13 79.3 66 75.8
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.7e-13 78.6 63 71.4
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.7e-13 78.6 63 69.8
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.7e-13 78.6 63 69.8
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.7e-13 78.6 65 73.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.1e-12 77.0 63 71.4
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.4e-12 76.6 65 69.2
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.4e-12 76.6 65 72.3
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.9e-12 76.3 68 69.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.4e-12 75.9 65 69.2
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.2e-12 75.5 63 69.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 4.1e-12 75.1 66 71.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.4e-12 74.7 65 69.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.1e-12 74.3 66 65.2
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 7.1e-12 74.3 64 67.2
CAN.G1630.2 Capsicum annuum HOM05D062499 ORTHO05D010235 1.2e-11 73.6 57 64.9
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.6e-11 73.2 59 66.1
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.6e-11 73.2 66 66.7
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-11 72.8 67 62.7
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-11 72.4 65 64.6
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-11 72.4 65 64.6
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-11 72.4 65 64.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-11 72.4 65 64.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.7e-11 72.4 65 64.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-11 72.0 65 66.2
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 6.0e-11 71.2 66 65.2
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.8e-11 70.9 62 64.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.3e-10 70.1 65 64.6
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-10 69.7 65 64.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 2.3e-10 69.3 63 65.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 2.3e-10 69.3 67 61.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.3e-10 69.3 66 62.1
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 2.3e-10 69.3 66 62.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.9e-10 68.6 66 62.1
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.9e-10 68.6 67 61.2
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.1e-10 68.2 63 61.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.6e-10 67.4 63 61.9
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.3e-09 65.5 65 63.1
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 4.3e-09 65.1 65 58.5
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 4.3e-09 65.1 65 58.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 4.3e-09 65.1 66 63.6
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 6.2e-08 61.2 62 61.3
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.1e-07 60.5 66 57.6
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.8e-07 59.7 63 58.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.2e-06 57.0 66 54.5


User provided reference genes

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