Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-118 428.7 216 100.0
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-70 270.4 252 62.3
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-70 269.2 279 59.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-70 269.2 279 59.1
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-70 269.2 279 59.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.6e-65 252.7 220 64.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.0e-62 243.0 272 55.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.0e-62 243.0 272 55.1
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.5e-62 242.3 272 55.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.0e-62 241.5 272 55.1
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.0e-62 241.5 272 55.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.8e-62 241.1 273 54.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 7.8e-62 241.1 272 54.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 7.8e-62 241.1 272 54.4
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.3e-61 239.6 273 54.9
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.6e-61 238.0 272 52.9
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 9.5e-60 234.2 272 54.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 9.5e-60 234.2 272 54.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.5e-60 234.2 272 53.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-59 233.4 281 53.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.6e-59 233.4 272 53.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.8e-59 232.6 264 54.9
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.8e-59 232.6 264 54.9
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.1e-58 229.2 242 55.4
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.1e-58 229.2 270 53.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-58 227.6 264 54.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-58 227.6 264 54.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-58 227.6 264 54.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-58 227.6 264 54.9
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.2e-57 227.3 264 53.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-57 227.3 264 53.0
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.2e-55 219.2 265 50.6
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 5.4e-55 218.4 276 52.2
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-54 216.9 242 56.2
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 6.0e-54 214.9 265 53.6
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 7.8e-54 214.5 133 81.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 8.6e-53 211.1 271 52.4
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-52 210.7 264 52.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.3e-52 209.1 266 51.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-51 206.8 238 52.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.6e-51 205.7 244 53.3
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.9e-47 193.4 247 50.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 4.1e-47 192.2 274 49.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-45 186.8 226 53.5
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-45 186.8 226 53.5
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.7e-45 186.8 228 51.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.1e-45 185.3 250 49.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 6.6e-45 184.9 250 49.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.3e-44 182.2 241 50.6
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.7e-43 178.7 133 69.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.2e-42 175.3 216 53.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.5e-41 173.7 215 53.0
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.6e-41 172.9 259 44.4
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-39 167.5 231 49.8
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.2e-38 164.1 109 78.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.1e-38 163.3 109 77.1
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 4.6e-38 162.2 109 76.1
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-38 161.8 109 77.1
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-38 161.8 109 77.1
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.0e-37 161.0 109 77.1
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.0e-37 161.0 101 82.2
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-37 160.6 101 81.2
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.3e-37 160.6 190 53.2
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.3e-37 159.8 109 76.1
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 5.6e-36 155.2 211 50.2
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 5.6e-36 155.2 121 68.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.3e-35 154.1 115 72.2
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.1e-35 153.3 101 80.2
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.4e-34 150.6 94 83.0
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.1e-30 136.7 196 48.0
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 3.9e-29 132.5 82 82.9
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.9e-29 132.5 214 43.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.1e-28 131.0 213 43.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.5e-28 129.8 196 46.4
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 7.4e-28 128.3 110 66.4
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.2e-27 125.2 193 44.6
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-26 124.4 82 80.5
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.8e-26 123.6 185 46.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 3.1e-26 122.9 75 84.0
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 3.1e-26 122.9 207 43.0
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.0e-26 121.3 212 44.3
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 3.4e-25 119.4 79 81.0
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.6e-25 118.2 162 50.6
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.3e-24 117.5 82 75.6
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 2.2e-24 116.7 92 66.3
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 3.8e-24 115.9 82 74.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-23 113.2 76 76.3
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 7.1e-23 111.7 76 76.3
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-21 107.1 85 67.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.0e-21 106.3 82 70.7
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.8e-19 99.8 76 65.8
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 6.2e-19 98.6 115 51.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.1e-18 97.8 68 75.0
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.4e-18 97.4 82 69.5
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.8e-18 97.1 68 73.5
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.0e-18 95.9 68 73.5
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.0e-18 95.9 68 73.5
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 4.0e-18 95.9 68 73.5
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-18 95.9 68 73.5
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.0e-18 95.9 68 73.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 6.9e-18 95.1 68 73.5
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.8e-16 89.4 175 41.1
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 3.2e-15 86.3 51 84.3
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.2e-15 86.3 65 72.3
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 4.2e-15 85.9 88 56.8
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 7.1e-15 85.1 93 55.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-14 84.0 88 54.5
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-14 83.6 82 59.8
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.7e-14 83.2 48 85.4
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.7e-14 83.2 48 85.4
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.6e-14 82.4 88 54.5
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.9e-13 79.3 93 52.7
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-12 77.0 130 42.3
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.8e-11 73.2 45 80.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 3.1e-10 69.7 41 78.0
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.5e-09 67.4 48 75.0
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-06 57.4 45 64.4


User provided reference genes

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