Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 3.2e-92 341.7 164 100.0
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-70 269.2 161 81.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-67 259.2 148 84.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 5.3e-63 244.6 161 75.8
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 9.4e-60 233.8 148 77.7
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.8e-58 229.6 148 77.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.8e-58 229.6 148 77.0
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.2e-58 228.0 152 73.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.8e-58 227.3 152 73.7
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.4e-57 224.9 148 73.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 5.7e-57 224.6 148 75.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.7e-57 224.6 147 76.9
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-57 224.2 147 76.9
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.3e-56 223.4 148 73.0
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.3e-56 223.4 148 73.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-56 223.0 148 73.0
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-56 223.0 148 73.0
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-56 223.0 148 73.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-56 222.2 147 76.2
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-56 222.2 147 76.2
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-56 222.2 147 76.2
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-56 222.2 147 76.2
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.8e-56 221.5 147 76.2
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.3e-56 221.1 148 73.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.3e-56 221.1 118 86.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.3e-56 221.1 118 86.4
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-56 220.7 148 74.3
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-56 220.7 148 74.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.1e-55 220.3 158 70.9
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.1e-55 218.8 148 73.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.1e-55 218.4 148 74.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.1e-55 218.4 148 74.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.1e-55 218.4 148 74.3
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.0e-55 217.6 146 74.7
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.2e-54 216.9 161 68.9
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-53 213.0 147 72.8
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-53 213.0 147 72.8
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-53 212.6 148 71.6
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.9e-53 212.2 147 71.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 3.8e-53 211.8 146 73.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 3.8e-53 211.8 146 73.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.8e-53 211.8 146 73.3
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 6.5e-53 211.1 146 71.9
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-52 209.5 148 70.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.3e-52 208.8 148 71.6
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-51 205.3 155 65.8
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 3.0e-50 202.2 146 69.9
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 5.2e-50 201.4 130 73.8
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.4e-49 198.7 140 72.1
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 1.6e-46 189.9 129 70.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.0e-42 177.2 126 70.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.5e-41 171.0 148 63.5
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.4e-40 167.9 98 80.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.4e-40 167.9 98 80.6
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.6e-38 163.3 114 72.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 2.8e-35 152.5 86 81.4
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.9e-34 147.5 105 68.6
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 4.6e-30 135.2 118 63.6
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.5e-28 129.4 77 79.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.4e-25 119.0 145 49.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.0e-21 107.5 79 70.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 5.6e-20 101.7 77 64.9
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 4.7e-19 98.6 69 69.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 8.9e-18 94.4 74 66.2
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.2e-17 94.0 77 64.9
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-17 93.6 70 64.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-17 92.8 74 66.2
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.5e-14 82.4 69 65.2
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.3e-12 74.7 64 64.1
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 66.7
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.0e-09 66.6 59 61.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-09 66.6 56 64.3
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-06 56.6 28 89.3


User provided reference genes

Program Settings