Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 1.5e-50 202.6 105 100.0
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 7.2e-21 104.0 91 60.4
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.4e-21 103.6 79 62.0
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 3.5e-15 85.1 104 51.9
Sopen09g031600 Solanum pennellii HOM05D005136 ORTHO05D024799 4.5e-15 84.7 102 50.0
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.3e-14 83.2 104 50.0
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.5e-13 79.7 70 51.4
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 54.3
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 54.3
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 54.3
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 52.9
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 54.3
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 4.2e-13 78.2 70 54.3
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.2e-13 77.4 76 51.3
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.2e-13 77.4 76 51.3
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 9.5e-13 77.0 70 50.0
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 9.5e-13 77.0 70 52.9
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.2e-12 76.6 70 51.4
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 4.7e-12 74.7 70 50.0
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 6.1e-12 74.3 70 50.0
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 6.1e-12 74.3 70 50.0
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 6.1e-12 74.3 70 50.0
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 6.1e-12 74.3 70 51.4
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 8.0e-12 73.9 70 50.0
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 8.0e-12 73.9 70 52.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.0e-11 73.6 70 47.1
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.0e-11 73.6 70 52.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 50.0
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 48.6
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.4e-11 73.2 70 50.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.8e-11 72.8 70 47.1
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.8e-11 72.8 70 48.6
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.8e-11 72.8 70 51.4
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.8e-11 72.8 70 51.4
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.3e-11 72.4 70 48.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 2.3e-11 72.4 70 44.3
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.3e-11 72.4 70 44.3
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.0e-11 72.0 70 50.0
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.0e-11 72.0 70 50.0
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.0e-11 72.0 70 50.0
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.0e-11 72.0 70 47.1
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 3.0e-11 72.0 70 48.6
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 4.0e-11 71.6 70 48.6
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 4.0e-11 71.6 70 47.1
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 48.6
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 48.6
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 45.7
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 45.7
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 47.1
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 47.1
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 44.3
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 5.2e-11 71.2 70 48.6
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 48.6
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 50.0
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 50.0
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 48.6
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 47.1
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 6.8e-11 70.9 70 47.1
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 8.8e-11 70.5 70 45.7
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 8.8e-11 70.5 70 48.6
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 8.8e-11 70.5 70 47.1
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 8.8e-11 70.5 70 47.1
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.8e-11 70.5 70 48.6
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 8.8e-11 70.5 92 40.2
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.2e-10 70.1 70 48.6
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.2e-10 70.1 69 46.4
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.5e-10 69.7 70 47.1
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.5e-10 69.7 70 47.1
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.5e-10 69.7 70 47.1
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.5e-10 69.7 70 47.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.5e-10 69.7 70 47.1
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.0e-10 69.3 70 48.6
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-10 69.3 70 48.6
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.6e-10 68.9 70 48.6
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.6e-10 68.9 70 47.1
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 2.6e-10 68.9 82 42.7
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.4e-10 68.6 70 47.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 3.4e-10 68.6 70 47.1
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 3.4e-10 68.6 70 48.6
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 3.4e-10 68.6 70 48.6
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.4e-10 68.2 70 51.4
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 4.4e-10 68.2 70 47.1
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 5.7e-10 67.8 69 44.9
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.7e-10 67.8 70 48.6
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.7e-10 67.8 70 48.6
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.7e-10 67.8 70 48.6
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 5.7e-10 67.8 70 47.1
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 5.7e-10 67.8 70 45.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 7.5e-10 67.4 70 45.7
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 7.5e-10 67.4 69 43.5
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.3e-09 66.6 70 48.6
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.3e-09 66.6 70 44.3
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.3e-09 66.6 70 44.3
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-09 66.6 70 45.7
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-09 66.6 70 45.7
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.7e-09 66.2 89 38.2
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.7e-09 66.2 66 47.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.2e-09 65.9 102 39.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.2e-09 65.9 102 39.2
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 2.2e-09 65.9 102 39.2
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.2e-09 65.9 70 45.7
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.2e-09 65.9 70 47.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.8e-09 65.5 70 47.1
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 2.8e-09 65.5 51 62.7
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.8e-09 65.5 78 43.6
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.8e-09 65.5 70 44.3
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 4.9e-09 64.7 70 45.7
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 4.9e-09 64.7 102 39.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.9e-09 64.7 102 40.2
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 4.9e-09 64.7 70 45.7
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 4.9e-09 64.7 70 41.4
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 6.3e-09 64.3 102 40.2
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 8.3e-09 63.9 69 42.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.3e-09 63.9 78 42.3
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 8.3e-09 63.9 70 42.9
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.1e-08 63.5 70 44.3
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.1e-08 63.5 70 42.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-08 63.2 102 39.2
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.4e-08 63.2 92 40.2
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-08 62.8 66 48.5
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.1e-08 62.0 92 39.1
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.1e-08 62.0 70 40.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.4e-08 61.2 69 42.0
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 9.2e-08 60.5 80 43.8
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.0e-07 59.3 70 41.4
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.9e-07 57.8 66 45.5
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 7.7e-07 57.4 71 43.7
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 7.7e-07 57.4 70 40.0
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 1.0e-06 57.0 70 37.1
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-06 56.6 66 39.4
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-06 56.2 70 44.3
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.3e-06 55.8 71 38.0


User provided reference genes

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