Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 3.9e-179 631.3 318 100.0
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 3.3e-149 531.9 490 62.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.4e-137 491.1 484 59.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.3e-134 483.4 484 58.7
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.0e-134 481.5 484 58.7
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.1e-116 422.9 491 53.4
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.5e-109 399.4 510 50.8
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.1e-100 369.8 493 47.7
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.4e-99 367.1 492 47.6
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.4e-98 362.5 492 47.4
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 9.3e-96 354.4 498 45.4
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 7.4e-93 344.7 497 45.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.8e-91 340.1 480 45.8
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.6e-90 336.3 500 43.4
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.3e-89 334.0 492 44.5
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 8.4e-89 331.3 501 44.3
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.8e-86 323.6 501 43.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.7e-86 321.6 488 44.3
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 3.3e-85 319.3 493 43.4
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 5.6e-85 318.5 515 43.3
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 6.2e-84 315.1 497 41.2
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.4e-83 313.9 502 42.0
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.4e-83 313.2 495 42.4
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.0e-83 312.4 493 42.4
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 6.9e-83 311.6 410 48.5
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.2e-82 310.8 498 42.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.6e-82 308.1 499 41.7
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.3e-81 307.4 501 42.1
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.9e-81 306.2 501 41.7
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.1e-80 304.3 501 41.5
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.1e-80 304.3 502 41.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.2e-80 302.4 501 41.3
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 9.3e-80 301.2 502 41.4
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 4.6e-79 298.9 496 41.3
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 7.9e-79 298.1 493 41.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 7.9e-79 298.1 499 41.1
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.0e-78 297.7 502 40.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.0e-78 297.7 503 41.0
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.3e-78 296.6 622 36.2
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.0e-78 296.2 494 41.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.1e-78 295.4 504 40.7
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.1e-77 294.3 547 39.7
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.9e-77 293.5 502 41.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.5e-77 293.1 504 40.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.3e-77 292.7 503 40.8
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 4.3e-77 292.4 496 40.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.6e-76 290.4 502 40.0
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 6.3e-76 288.5 495 40.0
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 8.2e-76 288.1 501 40.3
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.2e-76 288.1 504 41.5
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.1e-75 287.7 476 42.6
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.8e-75 287.0 496 40.5
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.8e-75 287.0 621 35.6
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.2e-74 284.3 496 41.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.0e-74 283.5 498 39.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.0e-73 281.2 488 40.6
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.0e-73 281.2 511 39.9
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.3e-73 280.8 497 40.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.3e-73 280.8 490 40.0
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.7e-73 280.4 494 40.5
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.7e-73 280.4 514 40.1
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 3.8e-73 279.3 505 39.4
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 5.0e-73 278.9 495 39.8
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 6.5e-73 278.5 452 42.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.4e-72 277.3 587 36.1
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.9e-72 276.9 496 40.1
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 4.2e-72 275.8 502 39.0
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 5.5e-72 275.4 490 39.8
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.3e-70 270.0 495 39.4
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 3.9e-70 269.2 455 43.3
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.5e-69 267.3 505 39.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 3.3e-69 266.2 502 38.8
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.7e-69 265.4 484 40.7
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.3e-68 264.2 515 39.8
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.7e-68 263.8 520 37.7
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.8e-68 262.3 498 39.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 6.3e-68 261.9 501 38.3
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 6.3e-68 261.9 498 39.2
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 1.4e-67 260.8 434 41.2
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.5e-66 257.3 503 38.6
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.5e-66 255.8 491 37.5
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.3e-65 254.2 502 38.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.2e-65 253.4 481 39.1
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 2.2e-65 253.4 477 40.0
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 3.8e-65 252.7 495 38.4
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 8.5e-65 251.5 579 36.6
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.1e-64 251.1 483 37.1
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.4e-64 250.8 491 37.3
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.4e-64 250.8 504 37.7
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 3.2e-64 249.6 502 37.6
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 9.4e-64 248.1 512 37.5
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.7e-63 246.5 508 37.8
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.0e-62 244.6 503 37.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.0e-62 244.6 438 42.5
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.8e-62 243.8 519 36.0
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 5.1e-62 242.3 506 36.6
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.5e-61 240.7 485 36.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 2.2e-60 236.9 499 37.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.2e-60 236.9 499 37.5
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.3e-60 235.3 515 37.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.8e-59 233.8 500 37.6
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.8e-59 233.8 500 37.6
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 9.1e-59 231.5 500 37.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.5e-58 230.7 501 36.1
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.5e-58 230.7 438 38.4
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.7e-52 209.5 241 49.4
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 3.8e-49 199.5 466 34.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 6.5e-49 198.7 205 55.1
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 3.2e-48 196.4 413 35.1
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.5e-42 176.0 426 34.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.0e-41 174.9 488 32.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.8e-41 172.9 503 31.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.5e-40 170.2 493 31.8
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.1e-39 167.2 399 33.8
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 6.1e-39 165.6 462 31.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.3e-33 147.1 433 32.3
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 4.2e-32 142.9 169 53.8
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 1.3e-28 131.3 79 79.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 9.2e-27 125.2 162 48.1
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 6.6e-25 119.0 466 27.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.3e-22 110.5 83 67.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.8e-21 105.9 112 55.4
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 3.2e-19 100.1 84 63.1
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.2e-18 98.2 121 51.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 6.0e-18 95.9 192 35.9
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.0e-17 95.1 69 68.1
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 8.6e-17 92.0 117 45.3
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.7e-09 67.8 45 71.1
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 6.2e-07 59.3 164 31.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 6.2e-07 59.3 168 27.4
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.8e-06 57.8 51 60.8


User provided reference genes

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