Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 0.0e+00 2388.6 1233 100.0
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1835.1 1173 83.1
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1804.3 1173 81.6
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1802.3 1173 81.4
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1786.5 1169 80.8
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1680.2 1142 77.2
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 0.0e+00 1537.3 1130 73.9
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1132.1 1170 55.6
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 1.1e-306 1057.0 1178 52.0
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 2.1e-305 1052.7 1163 51.7
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 3.1e-304 1048.9 1169 53.5
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 7.1e-301 1037.7 1172 50.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 2.1e-300 1036.2 1177 51.5
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 6.0e-300 1034.6 1170 52.2
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 1.0e-299 1033.9 1170 52.2
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 1.2e-297 1026.9 1155 51.7
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 2.1e-297 1026.2 1186 50.2
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 5.2e-296 1021.5 1180 50.5
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 8.9e-296 1020.8 1180 50.3
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 1.5e-295 1020.0 1122 52.0
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 2.6e-295 1019.2 1172 51.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 2.4e-293 1012.7 1127 51.9
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 3.2e-293 1012.3 1174 50.0
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 7.1e-293 1011.1 1185 49.8
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 9.3e-293 1010.7 1178 51.5
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 3.5e-292 1008.8 1184 49.1
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 4.6e-292 1008.4 1171 50.6
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 7.8e-292 1007.7 1134 51.1
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 3.9e-291 1005.4 1125 50.4
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 8.7e-291 1004.2 970 57.2
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 3.6e-289 998.8 1180 49.9
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 4.8e-289 998.4 1179 50.0
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 6.2e-289 998.0 1166 51.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 2.0e-287 993.0 1179 51.1
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 3.4e-287 992.3 1192 48.8
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 3.8e-286 988.8 1122 49.9
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 1.5e-282 976.9 1170 50.9
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 2.0e-279 966.5 1186 48.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 3.4e-279 965.7 1229 48.3
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 3.8e-278 962.2 1185 49.3
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 1.0e-275 954.1 1178 48.9
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 1.8e-275 953.4 1122 49.4
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 8.7e-275 951.0 1169 49.5
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 4.5e-271 938.7 1178 48.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 1.7e-270 936.8 1185 48.0
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 4.9e-270 935.3 1135 48.4
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 1.5e-266 923.7 1119 48.3
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 2.1e-265 919.8 916 56.8
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 2.1e-265 919.8 1173 48.3
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 3.7e-265 919.1 1125 48.5
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 1.8e-264 916.8 1120 48.4
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 2.4e-264 916.4 1119 48.6
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.0e-262 911.0 875 59.2
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 1.0e-262 911.0 1119 50.0
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.1e-261 907.5 1191 47.0
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 2.5e-261 906.4 1121 47.1
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 5.5e-261 905.2 1125 46.9
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 3.3e-258 896.0 1155 48.1
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 9.7e-258 894.4 1184 46.7
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 4.1e-256 889.0 1159 47.7
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 6.9e-256 888.3 1173 47.0
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 9.0e-256 887.9 1169 46.4
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 1.7e-254 883.6 1095 48.5
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 3.0e-251 872.8 1161 46.9
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 8.8e-251 871.3 1179 45.9
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 1.5e-250 870.5 1179 46.0
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.1e-248 864.4 1129 46.3
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 5.3e-248 862.1 1149 45.7
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 4.2e-245 852.4 1123 45.2
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 1.6e-244 850.5 1147 44.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 2.7e-244 849.7 1176 44.9
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.0e-239 833.6 1142 45.7
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 6.5e-238 828.6 1198 44.6
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.7e-236 823.2 1166 43.5
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 3.6e-236 822.8 1134 44.3
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 2.4e-232 810.1 1158 44.0
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 6.5e-222 775.4 752 56.1
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.2e-220 771.2 1060 45.1
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 3.6e-220 769.6 955 46.9
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 5.6e-213 745.7 967 46.4
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 2.4e-208 730.3 946 47.0
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 2.0e-202 710.7 1229 39.5
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.7e-201 707.6 797 51.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 8.1e-196 688.7 1175 40.3
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.3e-189 666.8 1235 37.4
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 2.4e-176 624.0 1128 38.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 6.9e-171 605.9 1167 36.9
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.1e-156 557.8 886 38.9
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 4.6e-143 513.5 997 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.4e-134 485.3 1156 33.7
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 7.7e-130 469.5 517 50.3
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 3.6e-127 460.7 1146 31.8
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 6.7e-118 429.9 1167 31.2
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 5.9e-114 416.8 663 40.1
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 3.9e-81 307.8 448 44.4
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.3e-60 239.6 884 28.1
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 8.7e-57 226.9 299 45.2
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.7e-41 174.1 413 32.2
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 6.9e-38 164.1 304 35.5
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 5.7e-32 144.4 179 50.8
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 9.7e-32 143.7 158 50.0
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.1e-30 140.2 172 47.1
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 5.3e-30 137.9 198 41.4
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.4e-27 129.8 212 39.2
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.5e-24 119.8 311 32.8
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 2.2e-23 115.9 90 55.6
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 7.2e-19 100.9 276 29.3
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.8e-17 96.3 110 54.5
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.0e-16 92.8 83 51.8
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.1e-14 87.0 168 33.9
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 6.7e-09 67.8 138 31.2
PGSC0003DMG400039571 Solanum tuberosum HOM05D014612 ORTHO05D003614 3.7e-07 62.0 74 45.9
PGSC0003DMG400040937 Solanum tuberosum HOM05D014612 ORTHO05D003614 4.8e-07 61.6 83 49.4
Sopen01g016730 Solanum pennellii HOM05D000158 ORTHO05D000197 1.4e-06 60.1 66 51.5
PGSC0003DMG400037418 Solanum tuberosum HOM05D014612 ORTHO05D003614 1.4e-06 60.1 74 44.6
Sopen03g018570 Solanum pennellii HOM05D000158 ORTHO05D000197 3.1e-06 58.9 71 50.7


User provided reference genes

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