Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.0e-124 449.1 229 100.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-103 379.4 236 84.7
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.8e-102 375.6 236 83.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.0e-101 370.5 241 80.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 9.0e-101 370.5 236 83.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.8e-91 338.6 240 75.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.5e-90 334.7 241 72.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.7e-89 332.4 241 71.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.3e-88 329.3 238 72.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.8e-88 327.4 242 71.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.5e-87 326.6 242 70.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.7e-86 322.0 242 69.8
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-83 311.6 223 74.4
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.5e-76 290.0 239 64.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 7.7e-76 287.7 248 62.1
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.7e-76 287.7 202 71.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 9.4e-74 280.8 240 62.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.2e-73 280.4 240 62.1
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-73 280.4 238 61.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.6e-73 280.0 243 60.5
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.7e-73 279.3 255 60.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.6e-73 278.9 241 61.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 6.1e-73 278.1 233 62.2
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.0e-72 277.3 255 59.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.9e-72 275.4 241 62.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 6.7e-72 274.6 243 60.9
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.8e-72 274.2 242 60.3
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.8e-72 274.2 246 62.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.1e-71 273.9 196 68.9
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.1e-71 273.9 234 61.1
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.5e-71 273.5 242 60.3
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-71 273.1 242 60.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.7e-71 271.6 233 63.1
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-70 270.4 186 69.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.3e-70 270.4 246 61.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.3e-70 270.4 236 59.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-70 270.0 173 75.1
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.7e-70 270.0 236 60.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.7e-70 270.0 246 61.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.7e-70 270.0 229 59.8
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.7e-70 270.0 238 58.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.7e-70 270.0 242 58.7
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.2e-70 269.6 235 60.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-70 269.6 238 59.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.2e-70 269.6 234 60.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 3.7e-70 268.9 235 60.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.8e-70 268.5 181 72.9
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.8e-70 268.5 234 59.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.3e-70 268.1 242 60.7
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 8.2e-70 267.7 227 62.1
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.1e-69 267.3 245 57.1
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.4e-69 266.2 221 63.3
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 3.1e-69 265.8 217 64.1
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.0e-69 264.6 239 60.3
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 9.1e-69 264.2 192 68.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 9.1e-69 264.2 192 68.8
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 9.1e-69 264.2 242 59.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.1e-69 264.2 178 71.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.1e-69 264.2 240 58.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-68 263.8 178 70.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.6e-68 263.5 234 60.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.0e-68 263.1 238 59.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.6e-68 262.7 184 69.6
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.6e-68 262.7 178 71.3
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.6e-68 262.7 227 60.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.5e-68 262.3 242 58.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.5e-68 262.3 242 58.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.5e-68 262.3 233 59.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.5e-68 261.9 178 70.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.9e-68 261.5 246 59.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 5.9e-68 261.5 213 61.5
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 5.9e-68 261.5 227 59.0
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 7.7e-68 261.2 221 61.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.7e-68 261.2 245 56.7
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.7e-68 261.2 221 62.0
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.7e-68 261.2 221 62.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.0e-67 260.8 234 59.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-67 260.4 225 60.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-67 260.4 225 60.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.3e-67 260.4 208 64.4
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-67 260.4 232 57.8
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-67 260.0 224 60.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.2e-67 259.6 245 58.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.2e-67 259.6 245 58.0
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 2.2e-67 259.6 218 61.9
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.2e-67 259.6 218 61.9
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.0e-67 258.5 178 70.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.0e-67 258.5 182 69.2
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.5e-67 258.1 251 53.4
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 8.5e-67 257.7 236 56.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.5e-66 256.9 233 58.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.5e-66 256.9 215 59.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.9e-66 256.5 184 67.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.5e-66 256.1 229 59.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.1e-65 253.1 245 55.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.1e-65 251.5 177 67.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.0e-64 248.8 225 55.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.0e-64 248.8 243 56.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 5.2e-64 248.4 234 57.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.8e-64 247.7 163 74.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.0e-63 246.5 176 68.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.0e-63 246.5 236 57.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.4e-63 245.4 245 54.7
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.7e-63 245.0 233 54.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.3e-62 243.8 228 58.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.2e-62 243.0 244 54.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.2e-62 243.0 179 62.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.8e-62 242.7 179 62.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.7e-62 242.3 245 53.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.7e-62 242.3 244 54.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.8e-62 241.9 183 65.0
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.8e-62 241.9 182 65.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 6.3e-62 241.5 228 56.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-61 240.7 243 53.1
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.8e-61 240.0 245 54.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.3e-61 238.4 178 64.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.0e-60 236.5 233 52.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.3e-59 233.8 175 63.4
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-59 233.0 165 65.5
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.9e-59 232.6 175 62.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.8e-59 232.3 237 53.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 5.0e-59 231.9 245 53.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.5e-59 231.5 163 67.5
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.1e-58 230.7 243 53.9
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 9.4e-58 227.6 225 52.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.6e-57 226.9 151 72.2
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.1e-57 226.5 225 52.4
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 6.1e-57 224.9 202 59.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.4e-56 223.8 172 62.2
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.0e-56 222.2 227 54.2
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.8e-56 221.1 147 72.1
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.8e-54 215.3 188 54.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.4e-53 213.0 173 61.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.4e-53 211.8 193 54.4
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 9.1e-53 211.1 172 55.8
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-51 206.8 164 64.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.9e-51 206.1 225 48.0
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-49 200.3 223 52.0
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-47 194.1 163 61.3
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.3e-46 188.0 162 55.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-45 185.7 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-40 170.6 147 60.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.5e-36 156.0 224 41.1
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-34 151.0 112 62.5
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.1e-33 146.7 179 41.9
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.2e-33 145.2 150 52.0
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-31 140.6 106 61.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.3e-30 134.8 230 37.0
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.9e-29 133.7 197 37.6
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 8.6e-27 124.8 199 35.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.4e-21 105.5 76 64.5
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 6.2e-17 92.0 163 33.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.1e-17 91.7 86 52.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.7e-14 84.0 87 46.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.4e-13 80.9 95 51.6
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.8e-09 66.6 57 59.6
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 4.8e-09 65.9 57 59.6
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 5.3e-08 62.4 65 46.2


User provided reference genes

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