Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.8e-266 921.4 465 100.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 8.2e-234 813.5 465 88.2
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 3.4e-232 808.1 466 89.1
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.5e-227 792.7 460 86.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 3.7e-210 734.9 462 83.3
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.7e-207 726.1 462 82.3
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.7e-205 718.8 459 81.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 8.6e-183 644.0 463 69.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 4.3e-182 641.7 463 68.7
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.5e-174 615.9 466 65.5
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.1e-173 610.9 461 65.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.6e-171 605.9 461 65.3
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 2.1e-168 596.3 460 63.3
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.0e-167 594.0 463 64.1
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 9.5e-166 587.4 462 63.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.3e-164 582.8 464 61.0
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.2e-162 576.2 497 60.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.4e-161 573.5 465 60.2
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 9.2e-161 570.9 462 61.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.2e-160 570.5 461 61.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.6e-160 570.1 462 60.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 3.9e-159 565.5 465 59.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 6.6e-159 564.7 433 64.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.3e-158 562.4 462 60.8
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 9.6e-158 560.8 465 59.4
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.6e-157 560.1 464 59.1
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.4e-155 552.4 465 60.0
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.8e-154 548.9 462 60.2
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.1e-153 547.4 464 58.0
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.4e-153 547.0 461 59.7
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.2e-153 545.4 464 58.0
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 5.4e-153 545.0 513 55.8
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 7.1e-153 544.7 461 59.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 6.6e-151 538.1 464 58.2
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.1e-150 537.3 460 58.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.1e-150 537.3 447 59.7
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.5e-150 537.0 462 57.8
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.5e-150 537.0 465 56.8
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.8e-149 532.7 468 58.1
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 4.8e-149 531.9 466 56.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 8.1e-149 531.2 464 57.1
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.1e-148 530.8 465 57.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.4e-148 530.4 466 56.9
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.4e-148 529.6 464 57.1
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.4e-148 529.6 464 57.1
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 6.9e-148 528.1 465 57.6
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-147 527.3 464 57.1
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.6e-147 526.2 464 56.9
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.7e-146 523.5 465 57.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.2e-146 523.1 446 57.8
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 2.9e-146 522.7 464 56.9
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.9e-146 522.7 464 56.5
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 3.8e-146 522.3 466 56.4
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.1e-145 520.8 464 56.5
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.9e-145 520.0 467 54.8
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 5.4e-145 518.5 467 55.5
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.3e-143 513.8 465 56.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 5.1e-143 511.9 465 56.3
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.5e-142 509.6 461 56.4
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.3e-142 509.2 465 53.1
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.3e-142 509.2 452 57.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-141 507.3 494 53.4
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.8e-141 506.1 465 55.9
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 8.1e-141 504.6 464 52.8
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.2e-139 500.7 466 52.4
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.5e-139 500.4 466 52.4
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 2.6e-139 499.6 465 54.0
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 5.8e-139 498.4 456 55.5
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.2e-138 496.5 467 52.0
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-138 496.5 466 51.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.2e-138 496.5 462 53.7
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.2e-138 496.5 464 52.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-137 494.2 466 52.4
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.9e-137 493.4 459 54.2
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.4e-137 493.0 465 52.3
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-137 492.7 462 53.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 4.2e-137 492.3 466 51.3
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 7.1e-137 491.5 464 52.4
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.2e-136 490.7 464 54.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.3e-135 486.5 464 54.7
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.1e-134 484.2 464 55.4
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.5e-134 483.8 465 51.0
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.5e-134 483.8 471 55.0
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.6e-134 481.9 471 54.8
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 2.1e-133 479.9 464 51.7
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.7e-133 479.2 465 53.1
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.1e-132 476.1 459 54.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.0e-132 475.7 436 55.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.6e-131 473.0 471 54.1
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 4.9e-130 468.8 490 51.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.5e-130 468.4 466 50.9
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.4e-129 467.2 464 53.0
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 9.6e-126 454.5 423 55.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.9e-124 448.4 466 50.0
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.5e-122 441.8 466 48.9
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.2e-121 439.5 466 51.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.4e-116 423.3 462 49.4
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.6e-115 419.9 467 47.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.6e-115 419.9 422 51.4
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 3.8e-114 416.0 448 47.3
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.9e-113 413.7 461 48.6
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 4.8e-109 399.1 422 50.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 9.1e-108 394.8 458 44.8
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.3e-103 380.2 451 45.5
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 9.4e-97 358.2 296 58.4
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.1e-94 351.3 427 43.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.2e-91 341.3 525 40.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.3e-87 327.0 368 45.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.3e-87 327.0 368 45.9
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 4.7e-80 302.8 278 55.4
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 8.8e-79 298.5 490 35.7
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.1e-76 291.6 445 37.5
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 3.6e-72 276.6 329 49.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.4e-71 274.6 466 38.0
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 4.4e-62 243.0 498 32.5
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 2.3e-58 230.7 513 31.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 6.4e-45 186.0 365 34.8
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.9e-44 184.5 365 31.0
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 7.1e-44 182.6 192 53.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 7.6e-38 162.5 163 51.5
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 2.9e-37 160.6 163 50.9
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-32 145.2 128 52.3
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-32 145.2 128 52.3
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.1e-31 142.1 421 26.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.4e-31 141.7 116 58.6
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.8e-31 141.4 127 55.9
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.4e-31 141.0 125 52.0
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.9e-29 133.3 105 54.3
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.4e-28 131.7 373 26.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.9e-28 131.3 455 23.5
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.1e-27 127.9 217 38.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 5.3e-23 113.2 279 28.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.8e-16 90.9 121 38.8
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.3e-15 86.7 168 33.9
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.5e-14 85.1 71 57.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.4e-12 78.6 80 50.0
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 5.1e-10 70.1 39 79.5
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.1e-09 68.9 90 43.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.9e-09 68.2 90 43.3
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.4e-07 61.2 38 60.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 1.2e-06 58.9 38 55.3


User provided reference genes

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