Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-50 202.6 101 100.0
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-50 202.6 101 100.0
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-50 202.6 101 100.0
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.9e-49 196.8 99 99.0
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.9e-49 196.8 99 99.0
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 7.9e-49 196.8 99 99.0
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 95.0
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 95.0
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 9.6e-47 189.9 101 95.0
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 9.6e-47 189.9 101 94.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 93.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 93.1
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 6.2e-46 187.2 101 91.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 8.1e-46 186.8 101 91.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 91.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 3.1e-45 184.9 101 91.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 4.0e-45 184.5 101 90.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 92.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 1.5e-44 182.6 101 91.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 101 91.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.6e-44 181.8 101 90.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 5.8e-44 180.6 101 89.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 5.8e-44 180.6 101 89.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 5.8e-44 180.6 101 89.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 5.8e-44 180.6 101 89.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 4.9e-43 177.6 101 89.1
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.9e-43 177.6 101 89.1
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.4e-42 176.0 98 89.8
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 9.3e-42 173.3 101 90.1
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 85.1
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 4.6e-41 171.0 99 86.9
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 1.0e-40 169.9 101 85.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 3.0e-40 168.3 97 85.6
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 3.0e-40 168.3 101 84.2
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 3.9e-40 167.9 101 85.1
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.7e-40 167.2 101 83.2
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 1.1e-39 166.4 88 92.0
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.1e-39 166.4 86 97.7
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 1.5e-39 166.0 94 88.3
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.9e-39 165.6 100 86.0
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 9.6e-39 163.3 101 81.2
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.6e-38 162.5 86 95.3
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 3.7e-38 161.4 99 83.8
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 4.8e-38 161.0 101 83.2
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 5.3e-37 157.5 86 93.0
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 1.7e-35 152.5 74 95.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.2e-34 148.3 101 74.3
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 9.3e-34 146.7 93 80.6
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 1.2e-33 146.4 70 97.1
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 6.7e-32 140.6 76 93.4
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 2.5e-31 138.7 72 91.7
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 7.4e-31 137.1 94 73.4
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 2.8e-30 135.2 79 88.6
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 6.3e-30 134.0 99 65.7
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 3.1e-29 131.7 101 71.3
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 7.2e-26 120.6 72 86.1
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 6.1e-25 117.5 56 96.4
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 1.1e-23 113.2 65 92.3
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.2e-22 109.0 66 89.4
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 4.8e-22 107.8 56 89.3
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.3e-19 99.8 50 90.0
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-18 96.3 57 91.2
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 7.2e-18 94.0 91 62.6
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 2.1e-17 92.4 53 83.0
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.1e-15 86.7 53 77.4
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 1.6e-12 76.3 51 80.4
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.0e-12 75.9 51 86.3
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 4.5e-12 74.7 99 50.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 1.7e-11 72.8 36 86.1
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.8e-08 62.8 92 44.6
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 5.2e-08 61.2 27 96.3
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 1.1e-07 60.1 27 96.3
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.1e-07 60.1 63 42.9
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.1e-07 60.1 91 40.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.0e-07 59.3 91 40.7
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.0e-07 59.3 92 40.2
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.0e-07 59.3 92 40.2
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 3.3e-07 58.5 91 40.7
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 3.3e-07 58.5 56 48.2
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.4e-07 58.2 91 41.8
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.4e-07 58.2 91 41.8
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 7.5e-07 57.4 91 40.7
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 9.7e-07 57.0 56 48.2
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.3e-06 56.6 95 37.9
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 41.1
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 2.2e-06 55.8 95 43.2
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 2.2e-06 55.8 94 40.4
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.8e-06 55.5 103 35.0
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.8e-06 55.5 94 37.2
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.8e-06 55.5 94 37.2
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 36.8
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 41.1
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 41.1
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 41.1
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 3.7e-06 55.1 103 36.9
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 37.9
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 38.9
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 40.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 36.8
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 35.1
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 4.8e-06 54.7 95 38.9
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 36.8
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 36.8
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 37.9
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 37.9
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 37.9
HanXRQChr00c0586g0576301 Helianthus annuus HOM05D000388 ORTHO05D009843 8.2e-06 53.9 83 48.2
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 36.8


User provided reference genes

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