Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 5086.9 2503 100.0
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 4555.4 2502 89.6
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 4552.7 2502 89.6
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 4233.3 2518 83.6
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 3936.3 2512 79.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2853.2 2558 58.0
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2712.9 2566 55.0
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2633.2 2553 54.8
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2527.7 2502 53.4
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2523.8 2560 52.4
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2510.7 2539 52.7
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2476.8 2626 51.1
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2447.5 2572 51.6
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2442.9 2582 51.3
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2427.1 2570 50.5
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2417.5 2584 51.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2407.5 2577 50.4
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2399.0 2581 50.4
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2399.0 2569 50.9
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2397.5 2655 49.5
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2396.7 2577 50.3
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2393.6 2568 50.5
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2389.0 2569 50.1
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2387.8 2585 50.1
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2386.7 2574 50.3
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2386.3 2574 50.3
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2377.1 2584 49.5
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2377.1 2582 49.3
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2372.8 2556 49.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2368.6 2553 49.6
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2365.9 2582 49.3
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2357.4 2582 49.9
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2355.9 2576 49.1
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2323.1 2515 49.7
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2295.8 2601 49.3
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2280.8 2428 50.9
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2260.3 2574 47.9
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2241.8 2567 47.6
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2237.2 2560 47.9
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2224.9 2584 47.4
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2223.7 2510 48.6
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2220.3 1338 83.4
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2218.0 2573 47.3
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2216.0 2595 47.5
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2206.8 2556 47.1
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2199.9 2568 47.1
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2197.5 2602 46.9
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2189.8 2540 47.0
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2186.8 2538 46.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2179.4 2543 46.7
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2161.7 2548 47.3
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2157.9 2564 46.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2130.9 2551 46.5
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2128.6 2556 46.7
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2121.7 2571 45.9
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2113.2 2584 45.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2110.9 2613 45.6
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2098.6 2587 46.0
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2050.0 2402 47.8
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2049.2 2579 44.9
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2036.9 2516 46.1
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2035.0 2582 44.5
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2028.4 2555 45.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2027.3 2416 46.6
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2023.8 2545 46.1
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2023.4 2558 44.6
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2011.9 2573 44.7
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1998.0 2566 44.7
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1981.5 2573 44.3
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1980.3 2566 44.3
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1966.4 2549 44.1
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1964.9 2566 43.9
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1963.0 2549 43.8
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1959.5 2549 44.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1956.4 2570 43.6
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1952.2 2550 43.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1931.8 2545 43.7
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1825.1 2558 42.3
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1805.8 1943 50.3
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1779.6 1091 81.1
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1721.1 2522 40.7
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1620.9 2563 38.7
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1587.0 1932 46.7
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1554.7 1981 44.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1515.4 2594 36.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1451.8 1892 43.0
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1390.6 1354 54.1
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1322.8 1546 48.4
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1298.9 1527 48.5
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1286.2 1529 47.9
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1278.1 1375 49.7
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1238.0 1344 49.4
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1129.4 1063 54.8
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 3.3e-305 1053.1 1102 51.5
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.9e-298 1029.6 1352 43.3
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 2.7e-291 1006.9 2741 29.4
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 6.3e-288 995.7 1073 48.1
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 6.3e-288 995.7 1073 48.1
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 3.9e-274 949.9 1199 44.8
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 9.4e-268 928.7 1824 35.4
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.0e-221 775.8 1610 33.5
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.2e-208 731.5 492 70.5
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 7.8e-206 723.0 1034 40.2
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.3e-197 695.7 582 59.8
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 8.1e-187 659.8 1204 34.4
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.3e-186 657.1 561 61.0
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 8.4e-184 649.8 570 55.8
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.7e-179 634.4 548 59.9
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.2e-167 593.6 681 47.6
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.8e-165 589.0 1702 29.6
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.1e-162 579.7 1105 35.9
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 4.5e-153 547.7 759 44.0
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 2.0e-145 522.3 451 55.9
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 3.1e-138 498.4 459 58.4
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 4.5e-121 441.4 434 51.8
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 4.7e-118 431.4 762 34.8
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 2.6e-116 425.6 294 72.1
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.7e-112 412.9 1672 26.5
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.9e-112 411.8 504 50.2
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 7.3e-111 407.5 946 31.8
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.2e-101 374.8 224 79.5
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.7e-99 369.8 1309 28.5
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.1e-95 357.1 177 94.9
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.1e-85 322.4 197 79.7
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.6e-76 292.7 230 64.3
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 2.4e-74 286.2 376 42.8
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.4e-69 270.4 270 53.0
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 6.1e-57 228.4 198 53.5
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.9e-55 223.4 191 55.0
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.0e-48 201.1 415 35.2
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 1.1e-45 191.0 120 75.0
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 7.2e-42 178.3 121 72.7
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 8.2e-38 164.9 121 71.9
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 8.5e-35 154.8 114 66.7
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 6.1e-33 148.7 519 25.0
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 3.9e-32 146.0 223 37.2
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.2e-32 145.6 258 34.5
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.8e-30 139.8 259 36.3
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 7.0e-29 135.2 211 37.9
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 7.0e-29 135.2 88 79.5
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 2.2e-27 130.2 163 43.6
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 1.9e-26 127.1 102 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.2e-26 126.3 267 32.2
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.2e-25 124.4 75 77.3
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.2e-24 119.0 102 60.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-23 117.9 116 50.0
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 7.5e-23 115.2 163 38.7
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.8e-22 113.2 116 49.1
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.1e-21 111.3 200 34.5
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 4.1e-21 109.4 314 29.9
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 4.1e-21 109.4 181 35.4
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 5.3e-21 109.0 120 52.5
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 5.5e-18 99.0 295 28.1
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.8e-13 84.0 48 79.2
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.3e-11 77.8 108 45.4
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 8.6e-11 75.1 160 38.8
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 7.2e-10 72.0 516 22.1
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.8e-09 70.1 112 37.5
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 1.0e-08 68.2 67 59.7
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 1.2e-07 64.7 103 35.0


User provided reference genes

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