Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 2102.8 1068 100.0
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1991.1 1068 94.0
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1944.1 1068 92.2
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1824.3 1069 87.0
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1812.3 1068 86.1
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1590.5 1088 73.9
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1588.5 1082 73.7
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1580.1 1084 75.2
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1578.9 1091 74.1
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1570.1 1074 73.6
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1566.6 1065 74.4
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1562.7 1078 73.0
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1557.3 1079 73.4
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1557.0 1087 71.4
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1556.2 1085 71.3
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1552.3 1074 73.1
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1551.6 1087 72.8
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1106 71.6
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1091 71.3
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1545.4 1068 74.3
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1538.9 1064 73.1
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1536.9 1075 72.4
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1536.5 1059 72.6
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1536.2 1077 71.3
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1533.1 1056 73.8
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1533.1 1068 71.8
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1530.4 1085 70.4
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1526.5 1082 72.9
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1521.9 1077 71.3
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1519.6 1067 72.2
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1519.2 1066 70.1
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1517.3 1081 71.1
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1517.3 1070 71.1
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1516.1 1064 73.3
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1511.9 1079 69.9
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1511.5 1062 71.5
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1510.7 1062 71.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1510.0 1079 71.1
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1506.1 1060 70.9
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1506.1 1063 70.8
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1505.3 1084 71.0
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1505.3 1052 71.5
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1505.3 1061 71.0
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1501.5 1096 69.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1501.1 1059 72.0
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1500.7 1059 71.3
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1499.6 1063 71.8
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1498.4 1059 71.8
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1498.0 1077 70.6
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1496.9 1076 71.5
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1494.6 1072 70.4
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1493.4 1056 70.5
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1492.6 1063 70.9
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1491.9 1075 69.7
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1490.7 1062 71.2
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1489.6 1063 71.2
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1487.6 1063 70.9
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1484.9 957 80.4
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1484.5 1073 69.7
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1484.2 1063 71.0
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1483.8 1071 69.7
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1483.0 1080 70.3
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1482.6 1073 69.6
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1478.0 1067 70.3
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1476.8 1067 70.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1476.5 1087 70.2
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1475.3 1059 70.0
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1474.5 1069 69.4
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1474.1 1067 70.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1472.2 1069 71.1
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1471.4 1067 69.7
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1467.6 1076 68.2
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1466.8 1071 70.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1465.7 1079 69.4
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1461.8 1081 69.6
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1456.0 1103 67.6
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1452.6 1077 69.6
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1450.3 1071 69.7
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1442.9 1065 69.4
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1436.8 1078 68.3
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1425.2 1067 69.1
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1414.4 1210 61.7
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1406.3 1121 66.5
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1374.4 979 71.8
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1369.8 1077 67.0
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1352.0 1083 65.1
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1341.3 1068 64.0
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1338.9 942 71.4
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1320.8 1075 62.9
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1278.5 1069 61.1
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1270.8 938 69.1
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1263.8 1196 57.3
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1223.4 1068 60.0
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1144.4 1072 60.0
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 0.0e+00 1120.5 606 92.9
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1116.7 759 72.6
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1076.6 758 70.7
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 9.1e-305 1050.4 755 71.0
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 6.8e-284 981.1 719 70.5
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 9.8e-283 977.2 1067 49.2
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 2.1e-264 916.4 1066 48.1
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 9.9e-259 897.5 1013 53.7
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 5.7e-230 802.0 725 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 3.2e-225 786.2 1007 44.4
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 4.6e-216 755.7 538 70.4
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 3.8e-210 736.1 403 92.3
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 4.5e-195 686.0 496 69.0
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.2e-184 651.4 655 55.3
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 5.7e-182 642.5 1505 32.1
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 4.2e-132 476.9 324 72.5
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.6e-83 315.5 190 78.4
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.9e-52 212.2 137 73.7
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.5e-41 176.0 109 78.9
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 3.5e-22 111.7 59 81.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.1e-18 100.1 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 3.2e-15 88.6 65 60.0
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.1e-11 75.9 46 73.9
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.1e-11 75.9 46 73.9
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 2.8e-11 75.5 126 38.1
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.6e-09 68.9 40 77.5
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 7.6e-09 67.4 71 50.7
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 2.2e-08 65.9 71 49.3


User provided reference genes

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