Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 3.9e-293 1010.7 521 100.0
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 2.0e-268 928.7 532 89.3
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 3.6e-262 907.9 528 86.9
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 2.0e-228 795.8 517 73.3
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 3.4e-228 795.0 489 78.9
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 5.8e-228 794.3 517 73.9
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 8.3e-227 790.4 485 81.0
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 4.1e-226 788.1 525 73.9
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 1.6e-225 786.2 520 73.3
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 6.0e-225 784.3 495 74.9
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 6.0e-225 784.3 517 74.3
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 1.5e-223 779.6 520 72.3
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 3.6e-222 775.0 487 73.3
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 1.1e-221 773.5 495 73.5
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 4.0e-221 771.5 482 75.5
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 3.4e-220 768.5 495 72.5
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 3.4e-220 768.5 497 73.4
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 7.5e-220 767.3 431 89.1
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 1.3e-219 766.5 488 79.5
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 6.4e-219 764.2 521 72.9
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.4e-218 763.1 495 74.1
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 5.4e-218 761.1 488 73.0
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 2.7e-217 758.8 521 70.8
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 2.7e-217 758.8 490 73.3
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 7.8e-217 757.3 482 74.7
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 7.8e-217 757.3 523 70.9
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 5.1e-216 754.6 488 72.3
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 1.6e-214 749.6 499 72.9
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 7.5e-212 740.7 518 69.5
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 1.3e-211 740.0 496 71.6
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.7e-211 739.6 495 72.5
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 3.7e-211 738.4 517 71.4
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 4.9e-211 738.0 483 72.3
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 6.4e-211 737.6 495 70.1
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 8.3e-211 737.3 496 71.0
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 1.9e-210 736.1 488 71.3
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.2e-210 735.3 487 70.4
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 5.4e-210 734.6 498 69.9
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 7.1e-210 734.2 445 76.0
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 3.5e-209 731.9 495 72.1
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 4.6e-209 731.5 518 68.1
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 7.8e-209 730.7 495 71.9
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.0e-208 730.3 495 70.9
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.3e-208 729.9 498 69.3
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 3.0e-208 728.8 518 70.1
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 3.9e-208 728.4 484 70.5
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 5.1e-208 728.0 498 69.7
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 6.6e-208 727.6 496 70.8
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 8.6e-208 727.2 513 67.4
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 1.5e-207 726.5 522 68.8
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 3.3e-207 725.3 514 68.1
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 4.3e-207 724.9 496 70.2
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 5.6e-207 724.5 495 69.7
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 3.6e-206 721.8 490 71.2
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 1.4e-205 719.9 495 69.9
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 4.0e-205 718.4 552 63.6
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 4.4e-204 714.9 511 66.9
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 7.6e-204 714.1 551 64.6
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 2.1e-201 706.1 539 65.3
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 8.7e-200 700.7 489 67.3
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 3.6e-198 695.3 510 67.3
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 2.4e-197 692.6 500 68.8
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 1.2e-196 690.3 489 65.8
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 2.6e-196 689.1 509 69.5
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 3.4e-196 688.7 489 65.2
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 9.9e-196 687.2 711 52.2
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 1.3e-195 686.8 489 65.8
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 1.9e-194 682.9 490 65.5
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 2.4e-194 682.6 489 65.6
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 7.1e-194 681.0 490 66.1
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 7.8e-193 677.6 473 69.3
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 2.5e-191 672.5 522 66.7
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 1.6e-190 669.8 489 65.6
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 1.2e-188 663.7 492 64.6
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 2.6e-188 662.5 517 66.0
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 7.6e-188 661.0 468 70.9
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 4.9e-187 658.3 517 63.8
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 3.5e-185 652.1 491 63.7
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 3.5e-185 652.1 495 64.0
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 6.7e-184 647.9 497 60.2
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 8.7e-184 647.5 487 64.7
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.6e-182 643.3 475 69.5
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 1.8e-181 639.8 512 62.3
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.8e-181 639.8 526 63.9
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 1.5e-180 636.7 478 63.8
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.9e-176 622.1 381 75.3
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 5.6e-175 618.2 527 60.0
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 7.4e-175 617.8 493 62.7
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 1.1e-170 604.0 393 76.1
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 1.6e-169 600.1 495 61.2
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 6.7e-168 594.7 395 74.2
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.6e-161 573.5 390 73.8
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 1.0e-155 554.3 345 74.2
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 3.7e-150 535.8 478 53.6
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 2.5e-146 523.1 486 52.5
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.3e-144 516.5 331 73.1
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.1e-141 507.7 388 65.5
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 3.0e-136 489.6 313 72.5
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 3.1e-133 479.6 489 48.5
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 1.8e-128 463.8 495 48.1
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 4.4e-127 459.1 387 62.0
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 3.8e-123 446.0 257 81.7
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 6.1e-121 438.7 295 70.8
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.4e-117 426.8 283 70.3
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 2.9e-115 419.9 289 67.5
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 8.6e-115 418.3 255 77.3
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 5.6e-106 389.0 468 47.0
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.0e-99 368.2 303 62.4
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 5.4e-85 319.3 381 42.8
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 6.6e-83 312.4 439 38.5
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.7e-78 297.7 312 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 3.2e-77 293.5 288 52.1
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 1.2e-76 291.6 199 67.3
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 1.2e-76 291.6 199 67.3
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 5.1e-75 286.2 152 89.5
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 5.6e-74 282.7 462 35.3
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 1.6e-52 211.5 153 68.0
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.3e-49 201.8 100 97.0
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 2.2e-49 201.1 478 30.3
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 4.1e-48 196.8 158 63.3
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 3.2e-45 187.2 142 62.0
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-43 181.8 197 47.2
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 9.7e-42 175.6 156 60.3
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 6.3e-33 146.4 130 53.1
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 7.2e-29 132.9 85 72.9
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.1e-26 125.6 128 55.5
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 1.3e-25 122.1 101 57.4
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 1.9e-21 108.2 82 63.4
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 2.7e-20 104.4 125 48.0
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.8e-19 101.7 59 83.1
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.3e-19 101.3 320 25.0
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 4.0e-19 100.5 296 25.0
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 2.6e-18 97.8 66 66.7
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 8.3e-17 92.8 69 63.8
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 4.1e-16 90.5 74 58.1
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.0e-14 85.9 320 23.4
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 3.2e-13 80.9 48 75.0
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 4.2e-13 80.5 51 74.5
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 7.2e-13 79.7 45 80.0
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 1.2e-12 79.0 55 63.6
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 4.4e-10 70.5 77 54.5
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 7.5e-10 69.7 113 45.1
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 2.4e-08 64.7 49 53.1
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 5.4e-08 63.5 49 51.0


User provided reference genes

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