Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G141.1 Capsicum annuum HOM05D018369 ORTHO05D001075 7.0e-43 177.2 110 100.0
Solyc06g005610.1 Solanum lycopersicum HOM05D018369 ORTHO05D001075 1.4e-38 162.9 110 94.5
PGSC0003DMG400002141 Solanum tuberosum HOM05D018369 ORTHO05D001075 1.4e-38 162.9 110 94.5
Sopen06g001570 Solanum pennellii HOM05D018369 ORTHO05D001075 6.4e-36 154.1 106 94.3
Cc01_g13180 Coffea canephora HOM05D001415 ORTHO05D001075 3.2e-19 98.6 110 71.8
CAN.G394.70 Capsicum annuum HOM05D018369 ORTHO05D001075 1.2e-18 96.7 125 60.8
Nitab4.5_0008249g0010 Nicotiana tabacum HOM05D018369 ORTHO05D001075 1.1e-16 90.1 43 100.0
Nitab4.5_0015123g0010 Nicotiana tabacum HOM05D018369 ORTHO05D001075 2.5e-16 89.0 43 97.7
MSTRG.21203 Avicennia marina HOM05D001415 ORTHO05D001075 5.6e-16 87.8 119 59.7
Solyc06g076320.1 Solanum lycopersicum HOM05D001415 ORTHO05D001075 1.6e-15 86.3 125 60.0
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 1.5e-13 79.7 106 64.2
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 9.9e-13 77.0 115 53.9
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 2.9e-12 75.5 117 43.6
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 3.8e-12 75.1 115 48.7
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 8.4e-12 73.9 111 54.1
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 8.4e-12 73.9 125 46.4
unitig_899.g15255 Utricularia gibba HOM05D001415 ORTHO05D001075 2.4e-11 72.4 109 61.5
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.4e-11 71.2 112 58.0
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.4e-11 71.2 112 58.0
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.4e-11 71.2 112 58.0
unitig_746.g26724 Utricularia gibba HOM05D001415 ORTHO05D001075 5.4e-11 71.2 107 50.5
Lsat_1_v5_gn_9_24441 Lactuca sativa HOM05D008503 ORTHO05D001075 7.1e-11 70.9 106 62.3
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 1.2e-10 70.1 115 60.9
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.5e-10 68.6 107 44.9
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 7.8e-10 67.4 108 52.8
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 7.8e-10 67.4 111 57.7
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.9e-09 65.1 103 60.2
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.9e-09 65.1 103 60.2
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.9e-09 65.1 106 39.6
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 5.1e-09 64.7 99 56.6
DCAR_005958 Daucus carota HOM05D001415 ORTHO05D001075 1.9e-08 62.8 142 38.0
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 1.9e-08 62.8 111 49.5
SalBow3G1548 Salvia bowleyana HOM05D001415 ORTHO05D001075 3.3e-08 62.0 106 42.5
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.3e-08 61.6 106 60.4
Migut.B01170 Erythranthe guttata HOM05D001415 ORTHO05D001075 7.3e-08 60.8 103 47.6
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 7.3e-08 60.8 108 42.6
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.3e-08 60.8 106 58.5
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 1.3e-07 60.1 118 44.9
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 1.3e-07 60.1 118 44.9
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 1.3e-07 60.1 113 39.8
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.6e-07 59.7 114 42.1
HanXRQChr01g0027111 Helianthus annuus HOM05D008503 ORTHO05D001075 1.6e-07 59.7 119 36.1
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 2.1e-07 59.3 43 62.8
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 2.8e-07 58.9 107 49.5
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 2.8e-07 58.9 100 51.0
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 3.6e-07 58.5 105 36.2
Sc21g0005940 Simmondsia chinensis HOM05D001415 ORTHO05D001075 3.6e-07 58.5 121 52.1
CSS0027316 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 4.8e-07 58.2 127 48.8
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 4.8e-07 58.2 102 52.9
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 4.8e-07 58.2 102 43.1
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 6.2e-07 57.8 118 48.3
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 6.2e-07 57.8 118 48.3
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 6.2e-07 57.8 107 50.5
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 8.1e-07 57.4 42 61.9
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.1e-07 57.4 36 72.2
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 8.1e-07 57.4 42 61.9
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 1.1e-06 57.0 111 50.5
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.1e-06 57.0 106 50.9
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.8e-06 56.2 106 57.5
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.8e-06 56.2 110 41.8
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.8e-06 56.2 109 45.0
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 2.4e-06 55.8 135 34.8
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.4e-06 55.8 43 58.1
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.4e-06 55.8 43 58.1
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.4e-06 55.8 43 58.1
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 4.0e-06 55.1 101 31.7
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 4.0e-06 55.1 37 67.6
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 4.0e-06 55.1 109 31.2
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.0e-06 55.1 108 50.9
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 5.3e-06 54.7 106 56.6
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 5.3e-06 54.7 101 31.7
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.3e-06 54.7 102 33.3
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 5.3e-06 54.7 35 62.9
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 6.9e-06 54.3 107 37.4
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 6.9e-06 54.3 36 58.3
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 9.0e-06 53.9 115 45.2
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 9.0e-06 53.9 119 46.2
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 9.0e-06 53.9 106 44.3
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 9.0e-06 53.9 102 28.4
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 9.0e-06 53.9 109 30.3
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 9.0e-06 53.9 42 57.1


User provided reference genes

Program Settings