Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.8e-288 994.6 511 100.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.7e-256 887.9 517 89.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.9e-256 887.5 514 89.3
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.4e-255 885.2 514 88.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.9e-232 808.5 521 81.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.2e-211 739.2 527 72.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.6e-206 721.8 524 72.9
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.6e-206 721.8 524 72.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.6e-206 721.5 526 72.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.3e-204 715.3 526 72.4
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 9.7e-204 713.8 519 71.5
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.7e-203 713.0 521 71.6
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.1e-202 710.3 536 68.8
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.1e-202 710.3 516 72.1
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.4e-202 709.1 461 77.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 3.1e-202 708.8 470 75.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.3e-202 708.0 521 71.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 5.3e-202 708.0 463 76.9
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 9.1e-202 707.2 524 70.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 9.1e-202 707.2 470 76.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-201 706.8 523 70.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 7.7e-201 704.1 431 79.8
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 7.7e-201 704.1 526 70.0
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.0e-200 703.7 470 75.1
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.3e-200 703.4 433 81.5
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.2e-200 702.6 535 68.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.4e-199 697.2 525 69.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.0e-197 692.2 525 69.1
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 5.2e-197 691.4 400 89.8
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 9.7e-196 687.2 524 68.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-195 685.6 498 70.9
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.8e-194 682.9 523 68.5
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 4.1e-194 681.8 503 71.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 4.1e-194 681.8 503 71.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.0e-194 681.0 468 73.3
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.0e-194 681.0 465 73.5
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.0e-194 681.0 525 68.6
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.1e-194 680.6 544 66.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.6e-193 679.9 525 68.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.6e-193 679.1 465 73.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.6e-193 679.1 451 75.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.9e-193 677.9 466 74.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-192 676.8 521 67.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.0e-192 674.9 468 71.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 6.5e-192 674.5 466 73.0
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-191 673.7 479 71.6
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.1e-191 673.7 456 74.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.9e-191 672.9 466 73.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.9e-191 672.9 523 68.1
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.2e-191 671.0 530 66.8
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.2e-190 670.2 433 76.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-190 669.8 536 66.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.0e-190 667.5 525 67.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 4.0e-189 665.2 532 67.9
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.6e-188 662.5 523 67.3
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.8e-187 658.3 532 65.8
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 6.3e-187 657.9 588 61.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 7.0e-186 654.4 397 81.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.6e-185 653.3 526 64.8
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 3.5e-185 652.1 530 64.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.9e-185 651.4 493 66.9
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 7.7e-185 651.0 535 64.3
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.0e-184 650.6 526 65.8
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.0e-184 648.3 517 66.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 6.1e-182 641.3 531 64.6
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.5e-180 636.7 528 64.8
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-179 633.3 515 63.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.9e-177 624.8 528 64.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 3.8e-176 622.1 524 64.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.5e-176 620.9 528 63.1
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.2e-175 619.0 526 62.7
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 7.2e-175 617.8 451 69.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.6e-174 615.5 499 63.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 6.8e-173 611.3 525 62.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.8e-173 610.9 521 62.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.5e-172 610.1 527 62.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.0e-172 609.8 500 63.4
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.0e-172 609.8 805 46.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 4.4e-172 608.6 464 66.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 9.8e-172 607.4 518 62.0
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-171 606.7 525 62.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.7e-171 606.7 525 62.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 6.3e-171 604.7 516 62.6
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.3e-171 604.4 484 64.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 3.1e-170 602.4 518 61.6
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 7.0e-170 601.3 529 61.2
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.6e-169 600.1 541 60.8
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.7e-169 599.4 520 61.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.3e-168 597.0 410 72.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 3.8e-168 595.5 403 73.7
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 9.5e-167 590.9 392 74.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-166 590.1 390 74.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.0e-161 573.2 485 62.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 6.6e-160 568.2 454 65.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.8e-158 562.8 475 65.3
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.0e-157 558.9 461 62.0
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 5.2e-157 558.5 450 63.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.2e-154 549.3 544 56.8
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 7.0e-154 548.1 491 60.9
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.7e-153 546.2 429 66.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.7e-152 543.5 526 58.0
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.5e-151 540.4 421 67.7
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 4.3e-151 538.9 555 54.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.6e-150 537.0 407 68.8
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 8.1e-150 534.6 444 64.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 9.5e-143 511.1 546 53.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.9e-138 496.9 457 57.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.1e-138 495.0 499 57.1
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.1e-137 493.4 450 59.6
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.2e-129 467.6 439 55.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-129 466.5 533 50.7
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 5.8e-124 448.7 476 51.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 7.6e-116 421.8 409 57.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 3.8e-115 419.5 462 50.9
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 6.7e-112 408.7 561 45.3
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 9.1e-93 345.1 438 45.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.3e-87 326.6 275 66.5
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 3.3e-87 326.6 445 43.4
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.7e-86 324.3 216 72.7
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 5.3e-85 319.3 299 55.9
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 5.2e-80 302.8 365 48.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-79 301.6 396 47.7
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.3e-75 288.1 462 38.3
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 5.5e-74 282.7 228 68.0
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 8.6e-59 232.3 124 99.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 8.6e-59 232.3 187 63.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.6e-57 228.0 444 39.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.4e-53 213.0 158 67.1
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.2e-52 211.8 159 62.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.9e-51 207.2 267 45.3
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.1e-50 205.3 116 90.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.4e-47 193.4 264 43.6
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-46 190.7 246 44.7
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.0e-37 159.5 259 40.9
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.1e-36 157.9 121 69.4
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-35 154.8 122 65.6
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 8.6e-35 152.5 244 42.6
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-34 152.1 114 71.1
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-34 151.4 367 31.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 7.3e-34 149.4 237 43.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 9.5e-34 149.1 97 77.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.2e-33 146.4 131 61.8
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 8.1e-33 146.0 168 54.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-32 145.6 131 61.8
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-30 138.7 100 66.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.1e-29 132.9 135 54.1
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.2e-28 132.1 116 58.6
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.6e-25 121.7 96 62.5
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-24 119.0 79 73.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.9e-22 110.9 221 37.1
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.9e-22 110.9 221 37.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.4e-21 107.8 130 50.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.1e-20 104.8 235 34.5
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.6e-18 96.7 94 59.6
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.8e-16 91.7 153 35.9
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-15 88.6 63 65.1
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 9.9e-15 85.9 63 63.5
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 9.9e-15 85.9 94 42.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.0e-11 74.3 68 57.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 2.8e-09 67.8 254 28.7
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.1e-08 65.9 117 43.6
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.8e-07 60.1 37 78.4
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.8e-07 60.1 37 78.4
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.8e-07 60.1 37 78.4


User provided reference genes

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