Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G140.31 Capsicum annuum HOM05D005122 ORTHO05D006057 6.4e-70 267.3 137 100.0
CAN.G210.4 Capsicum annuum HOM05D005122 ORTHO05D006057 3.7e-25 118.6 82 81.7
PGSC0003DMG400013574 Solanum tuberosum HOM05D005122 ORTHO05D006057 1.3e-22 110.2 82 74.4
Nitab4.5_0000170g0030 Nicotiana tabacum HOM05D005122 ORTHO05D006057 5.0e-22 108.2 82 74.4
Peaxi162Scf00191g00046 Petunia axillaris HOM05D005122 ORTHO05D006057 6.5e-22 107.8 82 73.2
Sopen07g022170 Solanum pennellii HOM05D005122 ORTHO05D006057 1.1e-21 107.1 82 70.7
Nitab4.5_0007169g0020 Nicotiana tabacum HOM05D005122 ORTHO05D006057 1.9e-21 106.3 82 73.2
Solyc07g042500.4 Solanum lycopersicum HOM05D005122 ORTHO05D006057 9.4e-21 104.0 82 69.5
Lj4A920G55 Lonicera japonica HOM05D005122 ORTHO05D006057 4.2e-13 78.6 87 50.6
Cfa002940 Carpinus fangiana HOM05D005122 ORTHO05D006057 8.0e-12 74.3 85 49.4
Haze_26065 Corylus avellana HOM05D005122 ORTHO05D006057 1.0e-11 73.9 85 50.6
Manes.16G092800 Manihot esculenta HOM05D005122 ORTHO05D006057 1.2e-10 70.5 84 50.0
MD15G1223300 Malus domestica HOM05D005122 ORTHO05D006057 1.5e-10 70.1 86 50.0
MD02G1100300 Malus domestica HOM05D005122 ORTHO05D006057 2.6e-10 69.3 86 51.2
RcHm_v2.0_Chr2g0095891 Rosa chinensis HOM05D005122 ORTHO05D006057 4.4e-10 68.6 124 38.7
Ca_21337_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 7.5e-10 67.8 92 42.4
Ca_30968_v3 Cicer arietinum L. HOM05D005122 ORTHO05D006057 7.5e-10 67.8 92 42.4
FAN19G2002 Fragaria x ananassa HOM05D005122 ORTHO05D006057 7.5e-10 67.8 84 50.0
FAN28G0954 Fragaria x ananassa HOM05D005122 ORTHO05D006057 7.5e-10 67.8 84 50.0
Phvul.003G127600 Phaseolus vulgaris HOM05D005122 ORTHO05D006057 2.8e-09 65.9 112 41.1
Rhsim05G0002500 Rhododendron simsii HOM05D005122 ORTHO05D006057 2.8e-09 65.9 77 46.8
Prupe.7G192500 Prunus persica HOM05D005122 ORTHO05D006057 3.7e-09 65.5 82 48.8
FvH4_1g09310 Fragaria vesca HOM05D005122 ORTHO05D006057 8.3e-09 64.3 84 48.8
CSS0025527 Camellia sinensis var. sinensis HOM05D005122 ORTHO05D006057 1.1e-08 63.9 81 44.4
CiPaw.03G200700 Carya illinoinensis HOM05D005122 ORTHO05D006057 1.4e-08 63.5 81 46.9
Cc06_g12660 Coffea canephora HOM05D005122 ORTHO05D006057 1.4e-08 63.5 81 44.4
QL11p002844 Quercus lobata HOM05D005122 ORTHO05D006057 1.4e-08 63.5 80 46.2
TWI34G1091 Tripterygium wilfordii HOM05D005122 ORTHO05D006057 1.8e-08 63.2 86 45.3
Duzib168G0854 Durio zibethinus HOM05D005122 ORTHO05D006057 2.4e-08 62.8 84 46.4
Nn8g38537 Nelumbo nucifera HOM05D005122 ORTHO05D006057 2.4e-08 62.8 82 47.6
Atru.chr7.1763 Acer truncatum HOM05D005122 ORTHO05D006057 3.1e-08 62.4 86 46.5
Migut.J00884 Erythranthe guttata HOM05D005122 ORTHO05D006057 3.1e-08 62.4 71 49.3
Psat4g019280 Pisum sativum HOM05D005122 ORTHO05D006057 3.1e-08 62.4 91 41.8
PSO104G0049 Papaver somniferum HOM05D005122 ORTHO05D006057 5.4e-08 61.6 101 39.6
GSVIVG01015020001 Vitis vinifera HOM05D005122 ORTHO05D006057 5.4e-08 61.6 86 44.2
Rhsim03G0225900 Rhododendron simsii HOM05D005122 ORTHO05D006057 7.0e-08 61.2 82 42.7
vmacro06355 Vaccinium macrocarpon HOM05D005122 ORTHO05D006057 7.0e-08 61.2 82 41.5
Glyma.13G113900 Glycine max HOM05D005122 ORTHO05D006057 9.1e-08 60.8 86 43.0
Gohir.D05G037400 Gossypium hirsutum HOM05D005122 ORTHO05D006057 9.1e-08 60.8 85 44.7
TPR.G12583 Trifolium pratense HOM05D005122 ORTHO05D006057 9.1e-08 60.8 91 40.7
Gorai.009G037900 Gossypium raimondii HOM05D005122 ORTHO05D006057 1.6e-07 60.1 85 44.7
Thecc.09G070600 Theobroma cacao HOM05D005122 ORTHO05D006057 1.6e-07 60.1 85 43.5
PSO421G0465 Papaver somniferum HOM05D005122 ORTHO05D006057 2.0e-07 59.7 79 50.6
SalBow6G0425 Salvia bowleyana HOM05D005122 ORTHO05D006057 2.0e-07 59.7 80 45.0
ECA234G0156 Erigeron canadensis HOM05D005122 ORTHO05D006057 2.7e-07 59.3 79 45.6
Lalb_Chr13g0299211 Lupinus albus HOM05D005122 ORTHO05D006057 2.7e-07 59.3 86 40.7
Ciclev10007237m.g Citrus clementina HOM05D005122 ORTHO05D006057 4.5e-07 58.5 86 44.2
Eucgr.C00770 Eucalyptus grandis HOM05D005122 ORTHO05D006057 4.5e-07 58.5 85 40.0
Potri.006G136900 Populus trichocarpa HOM05D005122 ORTHO05D006057 4.5e-07 58.5 53 60.4
PGR142G3115 Punica granatum HOM05D005122 ORTHO05D006057 4.5e-07 58.5 86 41.9
VMungo1215G1386 Vigna mungo HOM05D005122 ORTHO05D006057 4.5e-07 58.5 86 41.9
Gohir.A05G035900 Gossypium hirsutum HOM05D005122 ORTHO05D006057 5.9e-07 58.2 85 43.5
HanXRQChr10g0319771 Helianthus annuus HOM05D005122 ORTHO05D006057 5.9e-07 58.2 70 45.7
CANSAT56G0085 Cannabis sativa HOM05D005122 ORTHO05D006057 1.3e-06 57.0 84 40.5
Medtr4g124670 Medicago truncatula HOM05D005122 ORTHO05D006057 1.3e-06 57.0 94 37.2
TAR624G1119 Trochodendron aralioides HOM05D005122 ORTHO05D006057 1.3e-06 57.0 41 63.4
MSTRG.19429 Avicennia marina HOM05D005122 ORTHO05D006057 2.3e-06 56.2 79 41.8
COL.COLO4_21211 Corchorus olitorius HOM05D005122 ORTHO05D006057 2.9e-06 55.8 84 41.7
DCAR_028528 Daucus carota HOM05D005122 ORTHO05D006057 2.9e-06 55.8 80 43.8
CANSAT56G2058 Cannabis sativa HOM05D005122 ORTHO05D006057 3.8e-06 55.5 84 41.7
arahy.Tifrunner.gnm1.ann1.C788P2 Arachis hypogaea HOM05D005122 ORTHO05D006057 5.0e-06 55.1 85 43.5
arahy.Tifrunner.gnm1.ann1.EYQ1XG Arachis hypogaea HOM05D005122 ORTHO05D006057 5.0e-06 55.1 81 44.4
Sc08g0009130 Simmondsia chinensis HOM05D005122 ORTHO05D006057 5.0e-06 55.1 79 39.2
Sabra06G0107000 Salix brachista HOM05D005122 ORTHO05D006057 6.6e-06 54.7 86 43.0


User provided reference genes

Program Settings