Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 6.0e-32 140.2 69 100.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 4.4e-27 124.0 69 89.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.2e-25 117.9 69 87.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.1e-25 116.7 69 87.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.3e-23 111.7 69 84.1
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.9e-23 110.9 69 85.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.6e-23 110.2 69 82.6
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 8.6e-23 109.8 69 81.2
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 8.6e-23 109.8 69 81.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.5e-22 109.0 69 81.2
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.9e-22 108.6 69 79.7
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.5e-22 108.2 69 81.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-22 108.2 69 79.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-22 108.2 69 79.7
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.5e-22 108.2 69 79.7
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.3e-22 107.8 70 80.0
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.3e-22 107.8 69 79.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 9.6e-22 106.3 67 79.1
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-21 105.9 69 81.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.6e-21 104.4 69 76.8
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.6e-21 104.4 69 76.8
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.6e-21 104.4 69 79.7
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.7e-21 104.0 70 78.6
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 4.7e-21 104.0 70 78.6
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 4.7e-21 104.0 70 78.6
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.1e-21 103.2 69 76.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 8.1e-21 103.2 69 76.8
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-20 102.8 69 76.8
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-20 102.8 69 75.4
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.4e-20 102.4 69 76.8
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.4e-20 102.4 69 73.9
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.8e-20 102.1 69 75.4
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.4e-20 101.7 69 75.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 4.0e-20 100.9 69 75.4
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.2e-20 100.5 69 76.8
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.2e-20 100.5 69 75.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.2e-19 99.4 68 75.0
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.5e-19 99.0 69 72.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.5e-19 99.0 69 79.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.0e-19 98.6 69 76.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.0e-19 98.6 69 75.4
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-19 98.6 69 72.5
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-19 98.6 69 72.5
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.6e-19 98.2 70 72.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.6e-19 98.2 69 75.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 3.4e-19 97.8 69 75.4
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 3.4e-19 97.8 69 76.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 75.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 75.4
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 75.4
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 75.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 75.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 4.4e-19 97.4 69 72.5
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 7.6e-19 96.7 69 72.5
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 7.6e-19 96.7 72 75.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.3e-18 95.9 69 75.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.2e-18 95.1 69 71.0
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.2e-18 95.1 69 73.9
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.2e-18 95.1 70 72.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 3.8e-18 94.4 69 76.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.8e-18 94.4 69 73.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 4.9e-18 94.0 68 76.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 6.4e-18 93.6 69 72.5
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.4e-18 93.6 70 72.9
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 6.4e-18 93.6 69 72.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 6.4e-18 93.6 69 71.0
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 8.4e-18 93.2 68 72.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.4e-17 92.4 69 71.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.9e-17 92.0 69 71.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-17 92.0 69 72.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.4e-17 91.7 69 72.5
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.4e-17 91.7 69 71.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 4.2e-17 90.9 71 70.4
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.2e-17 90.9 69 68.1
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.4e-17 90.5 70 71.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 5.4e-17 90.5 69 72.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.2e-16 89.4 70 68.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-16 89.4 70 65.7
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-16 89.4 70 65.7
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.6e-16 89.0 69 63.8
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.1e-16 88.6 69 68.1
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.7e-16 88.2 70 70.0
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.7e-16 88.2 69 69.6
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.7e-16 88.2 69 65.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.5e-16 87.8 72 69.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.0e-16 87.0 69 69.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 6.0e-16 87.0 70 67.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.0e-15 86.3 69 68.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.0e-15 86.3 71 71.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.0e-15 86.3 70 68.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.0e-15 86.3 69 63.8
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.3e-15 85.9 66 69.7
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-15 85.9 74 64.9
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.3e-15 85.1 71 63.4
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.0e-15 84.7 60 73.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 8.7e-15 83.2 69 66.7
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 3.3e-14 81.3 69 65.2
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.3e-14 80.9 69 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 7.3e-14 80.1 69 60.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 9.6e-14 79.7 70 61.4
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.6e-13 79.0 69 66.7
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.6e-13 79.0 71 64.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.1e-13 78.6 70 65.7
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.8e-13 77.4 66 65.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.8e-12 75.5 69 60.9
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.4e-12 75.1 69 60.9
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.1e-12 74.7 71 57.7
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 6.9e-12 73.6 69 59.4
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.0e-12 73.2 73 58.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.6e-11 71.6 72 55.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.5e-11 70.9 69 53.6
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 5.8e-11 70.5 69 58.0
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 7.6e-11 70.1 69 56.5
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 7.6e-11 70.1 69 58.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 8.4e-10 66.6 70 57.1
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 8.4e-10 66.6 70 57.1
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.1e-09 66.2 66 54.5
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.9e-09 65.5 70 57.1
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.9e-09 65.5 70 57.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.2e-09 64.3 70 55.7
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.2e-09 64.3 70 55.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.2e-09 64.3 70 55.7
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.2e-09 64.3 70 55.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 4.2e-09 64.3 70 55.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.1e-09 63.5 69 53.6
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.1e-09 63.5 69 53.6
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 9.3e-09 63.2 70 55.7
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 9.3e-09 63.2 69 53.6
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 9.3e-09 63.2 70 55.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 9.3e-09 63.2 70 54.3
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.7e-08 61.6 69 52.2
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.8e-07 58.9 34 79.4


User provided reference genes

Program Settings