Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 2.3e-105 385.6 198 100.0
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 4.7e-98 361.3 199 94.0
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 4.0e-97 358.2 198 92.9
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.2e-97 357.8 198 92.9
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.2e-96 356.7 198 92.4
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.7e-95 351.7 198 90.9
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 2.4e-94 349.0 198 89.9
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.1e-94 348.2 198 90.4
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 6.6e-76 287.7 199 74.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.3e-75 285.0 198 75.3
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 7.3e-75 284.3 198 74.7
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 7.3e-75 284.3 198 74.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.3e-74 283.5 198 75.8
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.3e-74 283.5 199 71.9
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.3e-74 283.5 198 77.3
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.6e-74 283.1 198 75.3
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 4.8e-74 281.6 198 73.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 4.8e-74 281.6 199 74.4
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.5e-72 276.6 196 70.4
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 9.9e-72 273.9 198 72.2
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 9.9e-72 273.9 198 73.7
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.2e-71 272.7 198 72.2
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.9e-70 269.6 198 72.7
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 7.1e-70 267.7 197 72.1
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.1e-70 267.7 198 72.2
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 9.3e-70 267.3 196 71.4
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 2.1e-69 266.2 199 70.9
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 2.1e-69 266.2 198 71.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 2.7e-69 265.8 194 72.2
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.0e-68 263.8 198 68.7
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.3e-68 263.5 198 69.2
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.3e-68 262.7 198 71.7
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 3.0e-68 262.3 198 71.2
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 5.1e-68 261.5 198 67.7
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.5e-67 260.0 196 70.9
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.3e-67 258.8 196 66.3
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 3.3e-67 258.8 216 63.4
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 9.6e-67 257.3 199 66.8
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 9.6e-67 257.3 198 70.2
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.3e-66 256.9 197 68.0
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.1e-66 256.1 213 65.3
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 2.1e-66 256.1 196 67.3
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.8e-66 255.8 198 69.7
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.8e-66 255.8 217 65.9
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.8e-66 255.8 216 66.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 3.7e-66 255.4 196 67.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.8e-66 255.0 199 69.3
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.2e-66 254.6 199 69.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.2e-66 254.6 199 68.8
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 8.1e-66 254.2 216 63.9
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.1e-65 253.8 216 63.0
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.1e-65 253.8 216 63.4
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.4e-65 253.4 199 68.8
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.4e-65 253.4 193 70.5
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.4e-65 252.7 197 67.5
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.1e-65 252.3 203 66.0
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 3.1e-65 252.3 202 67.3
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.0e-65 251.9 196 68.9
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 4.0e-65 251.9 203 66.5
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.9e-65 251.1 198 67.7
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 6.9e-65 251.1 214 64.5
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 9.0e-65 250.8 202 67.8
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 9.0e-65 250.8 198 67.7
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 9.0e-65 250.8 198 67.2
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.5e-64 250.0 203 65.5
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.5e-64 250.0 193 68.4
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.5e-64 250.0 216 62.5
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.6e-64 249.2 200 66.0
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 2.6e-64 249.2 194 69.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.4e-64 248.8 200 66.0
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 4.5e-64 248.4 199 67.8
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.8e-64 248.1 198 67.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 5.8e-64 248.1 193 67.9
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 7.6e-64 247.7 194 68.0
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.7e-63 246.5 188 67.0
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.2e-63 246.1 205 64.4
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 2.2e-63 246.1 194 68.6
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.9e-63 245.7 182 73.1
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 8.4e-63 244.2 197 64.5
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.1e-62 243.8 194 68.6
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.1e-62 243.8 194 68.0
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.4e-62 243.4 189 68.3
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.4e-62 243.4 209 64.1
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 4.2e-62 241.9 156 78.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.6e-61 240.0 191 67.5
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.6e-61 238.4 209 62.7
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.3e-60 236.9 194 67.5
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 2.3e-60 236.1 215 60.9
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.1e-59 233.8 195 63.6
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.5e-59 233.4 179 68.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.3e-58 230.3 195 64.1
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 3.7e-58 228.8 197 60.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.3e-57 224.9 183 68.3
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 5.9e-56 221.5 179 63.7
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.1e-51 207.2 153 67.3
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.1e-45 186.4 178 55.6
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.7e-45 186.0 182 56.0
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.0e-44 184.1 195 53.8
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.1e-41 174.1 197 50.3
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 7.2e-38 161.4 200 48.5
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.0e-36 157.5 204 45.1
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.0e-36 156.0 190 47.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 4.4e-35 152.1 154 51.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.8e-34 149.4 196 45.4
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.8e-33 146.7 175 49.7
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 4.1e-33 145.6 155 49.0
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.7e-32 141.4 95 72.6
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 6.5e-31 138.3 112 61.6
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.5e-30 137.1 126 59.5
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 7.0e-25 118.2 156 46.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.2e-22 109.4 119 47.9
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.8e-20 103.6 139 44.6
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.8e-17 93.6 110 51.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.0e-12 76.3 154 33.8
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 2.4e-09 66.6 77 51.9
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 4.5e-08 62.4 36 75.0


User provided reference genes

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