Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 1.4e-42 176.0 98 100.0
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 9.1e-34 146.7 99 83.8
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.5e-33 146.0 99 84.8
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 5.9e-33 144.1 101 82.2
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 2.3e-29 132.1 95 81.1
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.7e-24 115.9 106 69.8
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.2e-24 115.5 93 66.7
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 5.2e-21 104.4 79 68.4
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 8.8e-21 103.6 89 62.9
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 8.8e-21 103.6 95 63.2
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 4.4e-20 101.3 84 66.7
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 4.4e-20 101.3 86 64.0
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 5.7e-20 100.9 85 63.5
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.8e-19 98.6 61 88.5
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 3.7e-19 98.2 83 65.1
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 8.2e-19 97.1 92 54.3
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.1e-18 96.7 78 66.7
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.1e-18 96.7 78 66.7
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 1.4e-18 96.3 82 67.1
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 1.8e-18 95.9 82 65.9
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 2.4e-18 95.5 88 60.2
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 2.4e-18 95.5 80 62.5
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 2.4e-18 95.5 79 63.3
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 4.1e-18 94.7 83 61.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 7.0e-18 94.0 101 53.5
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 9.1e-18 93.6 93 59.1
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 9.1e-18 93.6 64 76.6
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 9.1e-18 93.6 64 76.6
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 1.6e-17 92.8 78 64.1
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 3.5e-17 91.7 78 59.0
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 4.5e-17 91.3 93 53.8
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 4.5e-17 91.3 76 61.8
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 7.7e-17 90.5 86 58.1
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.0e-16 90.1 77 57.1
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.0e-16 90.1 77 57.1
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.0e-16 90.1 84 58.3
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.3e-16 89.7 80 57.5
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.3e-16 89.7 76 57.9
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 1.3e-16 89.7 83 56.6
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.3e-16 89.7 77 55.8
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.3e-16 89.7 85 55.3
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.7e-16 89.4 76 57.9
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.2e-16 89.0 79 62.0
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 2.2e-16 89.0 83 56.6
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.2e-16 89.0 78 65.4
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.9e-16 88.6 79 63.3
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 3.8e-16 88.2 78 59.0
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 3.8e-16 88.2 79 63.3
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 3.8e-16 88.2 77 55.8
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 6.5e-16 87.4 79 58.2
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 8.5e-16 87.0 91 51.6
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 1.5e-15 86.3 79 59.5
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 1.5e-15 86.3 64 70.3
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.5e-15 86.3 77 57.1
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 2.5e-15 85.5 76 56.6
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 3.2e-15 85.1 77 55.8
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 7.2e-15 84.0 77 53.2
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 7.2e-15 84.0 87 55.2
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 9.4e-15 83.6 77 54.5
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 9.4e-15 83.6 79 53.2
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.2e-14 83.2 94 51.1
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.1e-14 82.4 78 52.6
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.7e-14 82.0 66 60.6
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 3.6e-14 81.6 89 52.8
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 6.1e-14 80.9 74 56.8
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 8.0e-14 80.5 75 56.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 8.0e-14 80.5 75 56.0
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 1.0e-13 80.1 72 56.9
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 1.0e-13 80.1 75 56.0
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.8e-13 79.3 87 48.3
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.8e-13 79.3 78 52.6
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 1.8e-13 79.3 67 64.2
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 2.3e-13 79.0 75 54.7
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 3.0e-13 78.6 83 56.6
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 3.0e-13 78.6 74 56.8
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 4.0e-13 78.2 87 48.3
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 4.0e-13 78.2 76 53.9
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 8.8e-13 77.0 93 50.5
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 2.6e-12 75.5 68 60.3
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 3.4e-12 75.1 80 53.8
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 4.4e-12 74.7 66 54.5
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.4e-12 74.7 67 56.7
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.3e-11 73.2 87 43.7
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 5.4e-10 67.8 54 59.3
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.6e-09 66.2 56 58.9
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 6.5e-08 60.8 75 49.3
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 2.5e-07 58.9 90 33.3
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 3.2e-07 58.5 65 50.8
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 4.2e-07 58.2 50 62.0
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.1e-06 55.8 100 38.0
AagrBONN_evm.TU.Sc2ySwM_228.4082 Anthoceros agrestis HOM05D007649 ORTHO05D009668 6.1e-06 54.3 71 42.3


User provided reference genes

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