Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 3.6e-100 368.2 184 100.0
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 6.4e-65 251.1 127 96.9
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.1e-64 250.4 134 91.8
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 9.3e-64 247.3 127 94.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 9.3e-64 247.3 127 95.3
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.2e-63 246.9 127 94.5
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.6e-63 246.5 125 94.4
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.3e-62 243.4 139 84.2
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.9e-61 239.6 126 89.7
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.5e-61 239.2 127 89.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.5e-61 239.2 127 88.2
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 3.3e-61 238.8 127 88.2
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.3e-61 238.4 127 89.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.3e-61 238.4 127 88.2
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 5.6e-61 238.0 127 88.2
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 5.6e-61 238.0 126 89.7
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.3e-60 236.9 127 89.0
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.6e-60 236.5 127 88.2
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.6e-60 236.5 127 88.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.1e-60 236.1 127 88.2
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.8e-60 235.7 127 88.2
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.6e-60 235.3 127 88.2
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 3.6e-60 235.3 127 86.6
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.6e-60 235.3 127 87.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.8e-60 235.0 134 85.1
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 4.8e-60 235.0 127 86.6
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 6.2e-60 234.6 127 86.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 6.2e-60 234.6 127 87.4
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 6.2e-60 234.6 127 86.6
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.1e-60 234.2 127 86.6
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.1e-59 233.8 127 87.4
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.1e-59 233.8 127 87.4
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.1e-59 233.8 127 87.4
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.1e-59 233.8 127 86.6
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.4e-59 233.4 127 87.4
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.4e-59 233.4 127 85.0
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.4e-59 233.4 127 85.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.8e-59 233.0 127 85.8
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.8e-59 233.0 127 86.6
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.8e-59 233.0 127 84.3
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.8e-59 233.0 127 85.8
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.8e-59 233.0 127 86.6
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.4e-59 232.6 127 86.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.4e-59 232.6 127 86.6
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.4e-59 232.6 127 86.6
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.4e-59 232.6 127 88.2
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.1e-59 232.3 127 88.2
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-59 232.3 127 88.2
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-59 232.3 127 88.2
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 4.0e-59 231.9 127 84.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 4.0e-59 231.9 127 85.8
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 4.0e-59 231.9 127 86.6
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 4.0e-59 231.9 132 84.1
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.3e-59 231.5 127 86.6
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.3e-59 231.5 127 86.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 5.3e-59 231.5 127 86.6
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.3e-59 231.5 127 85.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 6.9e-59 231.1 127 86.6
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 6.9e-59 231.1 127 85.8
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 6.9e-59 231.1 126 87.3
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 9.0e-59 230.7 132 81.8
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 9.0e-59 230.7 126 87.3
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 9.0e-59 230.7 126 87.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.2e-58 230.3 127 85.8
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.2e-58 230.3 127 87.4
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.2e-58 230.3 126 85.7
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.2e-58 230.3 127 85.8
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.5e-58 229.9 127 85.0
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.5e-58 229.9 127 84.3
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 2.0e-58 229.6 126 86.5
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.0e-58 229.6 126 87.3
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 2.0e-58 229.6 126 86.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.6e-58 229.2 127 85.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.6e-58 229.2 127 87.4
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.6e-58 229.2 127 85.0
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 2.6e-58 229.2 127 83.5
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 2.6e-58 229.2 127 85.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.4e-58 228.8 135 80.7
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.4e-58 228.8 126 86.5
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.4e-58 228.4 126 85.7
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.4e-58 228.4 131 82.4
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 4.4e-58 228.4 127 85.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.8e-58 228.0 127 85.8
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 5.8e-58 228.0 126 84.1
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 5.8e-58 228.0 126 85.7
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 7.6e-58 227.6 127 83.5
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 9.9e-58 227.3 128 83.6
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 9.9e-58 227.3 127 84.3
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.7e-57 226.5 127 85.0
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 2.2e-57 226.1 127 84.3
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 6.4e-57 224.6 126 82.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 8.4e-57 224.2 127 83.5
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.1e-56 223.8 127 82.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.9e-56 223.0 127 82.7
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 3.2e-56 222.2 127 84.3
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 4.2e-56 221.9 127 81.9
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 5.4e-56 221.5 127 81.1
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.4e-56 221.5 144 76.4
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 7.1e-56 221.1 127 83.5
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 7.1e-56 221.1 127 83.5
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 7.1e-56 221.1 130 80.8
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 7.1e-56 221.1 130 80.8
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 7.1e-56 221.1 130 80.8
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 7.1e-56 221.1 130 80.8
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 2.1e-55 219.5 130 80.8
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.1e-55 219.5 127 81.1
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.3e-54 216.9 126 81.7
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-54 216.5 171 66.7
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.7e-54 216.5 127 81.1
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 3.0e-54 215.7 117 86.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.9e-54 215.3 127 78.7
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 8.7e-54 214.2 127 78.0
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.3e-52 210.3 129 77.5
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 8.1e-52 207.6 122 78.7
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 3.1e-51 205.7 127 78.0
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 6.9e-51 204.5 139 74.1
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-50 203.8 128 78.9
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 5.4e-48 194.9 126 74.6
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.8e-43 179.9 126 64.3
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 6.9e-43 177.9 126 64.3
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.2e-42 177.2 127 63.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.5e-42 176.8 129 64.3
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.2e-41 172.9 128 69.5
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.9e-40 169.9 138 61.6
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 8.7e-38 161.0 90 86.7
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.1e-37 160.6 93 82.8
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-37 159.1 90 85.6
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 9.6e-37 157.5 93 79.6
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.8e-36 156.0 138 61.6
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.8e-36 155.2 88 87.5
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 6.9e-35 151.4 87 85.1
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.6e-34 149.4 95 78.9
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.6e-34 149.4 127 61.4
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.5e-34 148.7 92 81.5
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.8e-34 148.3 89 83.1
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.8e-33 145.6 80 82.5
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.4e-33 144.4 88 80.7
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-32 143.7 88 80.7
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.1e-31 139.8 88 75.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 7.4e-29 131.3 77 84.4
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 5.3e-27 125.2 99 62.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.2e-26 124.0 80 75.0
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.6e-26 122.9 72 83.3
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 6.5e-25 118.2 69 75.4
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.3e-21 105.5 90 61.1
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 2.8e-20 102.8 57 84.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.9e-16 90.1 129 36.4
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 7.4e-13 78.2 45 75.6


User provided reference genes

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